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[177957_at]

Description C52E4.7 /REP_DB=WormBase Gene ID /WP=CE08949 /TR=Q18784 /GB=CAB01411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 10
(-2.2)
A 		23.7
(0.8)
A 		33.8
(3)
A 		6.4
(-3)
A 		27
B 9.1
(-0.8)
A 		4.3
(-3)
A 		6.7
(-1.9)
A 		17.4
(3)
A 		13
C 35.9
(1)
A 		2.2
(-3)
A 		5.1
(-2.7)
A 		52.5
(3)
A 		50
avr 18.3
(0.2) 		10.1
(-3) 		15.2
(-1) 		25.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 10.5
(-2.8)
A 		4.4
(-3)
A 		11.7
(-2.8)
A 		27.9
(-2.4)
A 		147.1
(0.8)
P 		231.3
(3)
P 		227
B 34.1
(-2.1)
A 		12.4
(-2.8)
A 		4.6
(-3)
A 		4.5
(-3)
A 		136.4
(0.8)
P 		212.6
(3)
P 		208
C 9.1
(-3)
A 		26.8
(-2.5)
A 		19
(-2.7)
A 		12.8
(-2.9)
A 		119.2
(0.3)
P 		207.4
(3)
P 		198
avr 17.9
(-2.8) 		14.5
(-2.9) 		11.8
(-3) 		15.1
(-2.9) 		134.2
(0.6) 		217.1
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.6
(-0.9)
A 		5.2
(0.3)
A 		8.8
(3)
A 		0.9
(-3)
A 		8
B 2.9
(1.2)
A 		1.1
(-3)
A 		1.6
(-1.8)
A 		3.7
(3)
A 		3
C 11.9
(3)
A 		0.6
(-3)
A 		1.8
(-2.4)
A 		8.8
(1.4)
A 		11
avr 6.1
(3) 		2.3
(-3) 		4.1
(-0.2) 		4.5
(0.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 1.9
(-3)
A 		1.6
(-3)
A 		2.5
(-2.9)
A 		7.1
(-2.4)
A 		44.4
(1.7)
P 		56.3
(3)
P 		55
B 11.9
(-2.2)
A 		4.1
(-2.8)
A 		1.1
(-3)
A 		1.2
(-3)
A 		55.4
(1.2)
P 		79.3
(3)
P 		78
C 3.4
(-2.9)
A 		8.2
(-2.5)
A 		4.8
(-2.8)
A 		2.6
(-3)
A 		38.6
(0.2)
P 		69.4
(3)
P 		67
avr 5.7
(-2.7) 		4.6
(-2.8) 		2.8
(-3) 		3.6
(-2.9) 		46.1
(1) 		68.3
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13722
Sequence Type Exemplar sequence
Representative Public ID C52E4.7 NCBI
Target Description C52E4.7 /REP_DB=WormBase Gene ID /WP=CE08949 /TR=Q18784 /GB=CAB01411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073608 NCBI Caenorhabditis elegans C52E4.7 (C52E4.7) mRNA, complete cds. 11/11 None
SNAP00000019789 ENSEMBL cdna:SNAP chromosome:CEL140:V:11996909:11998320:1 11/11 None
GENEFINDER00000019799 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11996909:11998320:1 11/11 None
C52E4.7 ENSEMBL cdna:known chromosome:CEL140:V:11996909:11998320:1 gene:C52E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11996908-11998320(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E4.7
Entrez Gene 183728 Entrez gene
SwissProt Q18784 EMBL-EBI
WormBase CE08949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01411 Hypothetical protein C52E4.7 [Caenorhabditis elegans] ref|NP_506009.1| C52E4.7 [Caenorhabditis elegans] 1.0E-161
blast CAE75365 Hypothetical protein CBG23349 [Caenorhabditis briggsae] 1.0E-124
blast CAB03118 Hypothetical protein F53B6.7 [Caenorhabditis elegans] ref|NP_492409.2| F53B6.7 [Caenorhabditis elegans] 6.0E-13
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 2.29999995231628
Sequence
Target Sequence 
>C. ELEGANS:177957_AT
ttgtgatcgtcatgcaattccttccgtcatcttctgctctccagattttgcttctgttga
aaccgctcatttgattaaatcatacattggtgaaaagtgtggtgcaattcgaatcgaacc
ggaactttccacacttcacaaatcagctcatgtattttttggaccgaatcatttcacatc
tttgggatacgggattgatgagaagaatccattgcacgctgtgtctgacggagtgtccct
atctgatttggtcaatcgcatcaaaagagcattctatgaattgacgtccaaagttgacaa
tgctctaataatcgtggattctctgtcaatgatgataatttcttcacttttccacaatgt
ctacattcgtaatgattcatctgtggatcttgaacgtcttcgtagtctagcttcattccc
atccctttctaattttactgcctaccgtgtaggtggacagactggagtgaaaacttatga
tttaaccagcacttgccttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGATCGTCATGCAATTCCTTCC 273 707 321 Antisense
TCTGCTCTCCAGATTTTGCTTCTGT 562 609 353 Antisense
TCGAACCGGAACTTTCCACACTTCA 472 599 434 Antisense
GGACCGAATCATTTCACATCTTTGG 308 523 481 Antisense
GAAGAATCCATTGCACGCTGTGTCT 290 341 522 Antisense
GAGTGTCCCTATCTGATTTGGTCAA 233 401 551 Antisense
TTCTTCACTTTTCCACAATGTCTAC 143 691 660 Antisense
ATCTGTGGATCTTGAACGTCTTCGT 131 35 699 Antisense
GAACGTCTTCGTAGTCTAGCTTCAT 176 347 712 Antisense
TTTCTAATTTTACTGCCTACCGTGT 312 671 746 Antisense
TGATTTAACCAGCACTTGCCTTCGT 626 427 798 Antisense
Sequence Source Affymetrix Proprietary Database