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[177956_at]

Description F13G3.2 /REP_DB=WormBase Gene ID /WP=CE05614 /TR=Q19419 /GB=CAA95790.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 28      6grp_total > 89      4grp_total > 19      6grp_cgc > 59      6grp_high1_sub > In      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 87.1
(-3)
P 		96.1
(-2.5)
A 		92.4
(-2.7)
M 		204.9
(3)
A 		118
B 84.8
(-3)
P 		163.4
(3)
P 		95.2
(-2.2)
P 		91
(-2.5)
P 		79
C 117.5
(0.7)
P 		57.2
(-3)
M 		57.1
(-3)
P 		155.5
(3)
P 		98
avr 96.5
(-1.7) 		105.6
(-0.9) 		81.6
(-3) 		150.5
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 111.6
(-3)
M 		114.9
(-2.7)
P 		133
(-0.9)
P 		126.5
(-1.5)
P 		173
(3)
P 		172.6
(3)
P 		61
B 146.8
(-0.7)
P 		174
(0.8)
P 		104.3
(-3)
P 		133
(-1.4)
P 		189.7
(1.7)
P 		213.7
(3)
P 		109
C 112.3
(-3)
P 		171.5
(1.6)
P 		148.8
(-0.2)
P 		163.8
(1)
P 		149.1
(-0.1)
P 		189.7
(3)
P 		77
avr 123.6
(-3) 		153.5
(-0.4) 		128.7
(-2.6) 		141.1
(-1.5) 		170.6
(1.1) 		192
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 31.7
(3)
P 		20.9
(-3)
A 		24.1
(-1.2)
M 		30
(2.1)
A 		11
B 27
(-0.8)
P 		40.4
(3)
P 		22.1
(-2.2)
P 		19.4
(-3)
P 		21
C 38.9
(3)
P 		16.4
(-3)
M 		19.9
(-2.1)
P 		26.2
(-0.4)
P 		23
avr 32.5
(3) 		25.9
(-0.8) 		22
(-3) 		25.2
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 20.6
(-3)
M 		40.9
(0.9)
P 		29
(-1.4)
P 		32.1
(-0.8)
P 		52.2
(3)
P 		42
(1.1)
P 		32
B 51.1
(-0.2)
P 		57.9
(0.6)
P 		25.3
(-3)
P 		35.2
(-1.9)
P 		77.1
(2.7)
P 		79.7
(3)
P 		54
C 41.6
(-1.3)
P 		52.3
(0.8)
P 		37.9
(-2)
P 		32.9
(-3)
P 		48.2
(0)
P 		63.5
(3)
P 		31
avr 37.8
(-1.6) 		50.4
(0.8) 		30.7
(-3) 		33.4
(-2.5) 		59.2
(2.5) 		61.7
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1496
Sequence Type Exemplar sequence
Representative Public ID F13G3.2 NCBI
Target Description F13G3.2 /REP_DB=WormBase Gene ID /WP=CE05614 /TR=Q19419 /GB=CAA95790.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059660 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-53) (srd-53) mRNA, complete cds. 11/11 None
GENEFINDER00000006950 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7302169:7304960:1 11/11 None
SNAP00000006936 ENSEMBL cdna:SNAP chromosome:CEL140:I:7302684:7304960:1 9/11 None
F13G3.2 ENSEMBL cdna:known chromosome:CEL140:I:7302169:7303818:1 gene:F13G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7302099-7303749(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-53
Ensembl F13G3.2
Entrez Gene 184430 Entrez gene
SwissProt Q19419 EMBL-EBI
WormBase CE05614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95790 Hypothetical protein F13G3.2 [Caenorhabditis elegans] ref|NP_492061.1| Serpentine Receptor, class D (delta) family member (srd-53) [Caenorhabditis elegans] 0.0
blast CAA95790 Hypothetical protein F13G3.2 [Caenorhabditis elegans] ref|NP_492061.1| Serpentine Receptor, class D (delta) family member (srd-53) [Caenorhabditis elegans] 1.0E-173
blast CAE74216 Hypothetical protein CBG21898 [Caenorhabditis briggsae] 1.0E-139
blast CAE74216 Hypothetical protein CBG21898 [Caenorhabditis briggsae] 1.0E-131
blast CAE17785 Hypothetical protein F13G3.12 [Caenorhabditis elegans] ref|NP_001021102.1| F13G3.12 [Caenorhabditis elegans] 1.0E-124
blast CAE17785 Hypothetical protein F13G3.12 [Caenorhabditis elegans] ref|NP_001021102.1| F13G3.12 [Caenorhabditis elegans] 1.0E-112
blast CAE74215 Hypothetical protein CBG21897 [Caenorhabditis briggsae] 1.0E-89
blast CAE67536 Hypothetical protein CBG13059 [Caenorhabditis briggsae] 6.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492061.1 7 15-37,50-69,100-122,134-156,193-215,242-264,277-299
F13G3.2 7 15-37,50-69,100-122,134-156,193-215,242-264,277-299
GENEFINDER00000006950 8 15-37,50-69,100-122,134-156,193-215,242-264,277-299,312-334
SNAP00000006936 3 21-40,75-97,124-146
Sequence
Target Sequence 
>C. ELEGANS:177956_AT
gacatattgcgccgttcattgctacagccattcctttcacgacgcaatgggattttgacg
ttgttcgtgcacaatcagtgaaagagcattcaacatatgatctttctatttatgctccat
tttctggattttctgatacaagatctttccaattcttgtttgtcactgcggcaattgcta
ttggagcatactttgtccctttaatgtcggtttttgttattcggaaaattatgatagtga
ccaaagctcattcaaaaatgtctgaaaacactaaacgtcacacgaggatgttaatgaagg
gtctggcgtgccaagttttgctcccattgatctcttattttcccatcattacgctttatt
tggtcactcaaatgacagcagaagagttccttataacagaacatcttctgaatattatga
cgtgtttccctgcactcgttgatccttttatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATATTGCGCCGTTCATTGCTAC 238 371 437 Antisense
GCCATTCCTTTCACGACGCAATGGG 24 279 463 Antisense
GGGATTTTGACGTTGTTCGTGCACA 210 497 485 Antisense
GATCTTTCTATTTATGCTCCATTTT 688 419 535 Antisense
TCTTGTTTGTCACTGCGGCAATTGC 379 617 590 Antisense
GAGCATACTTTGTCCCTTTAATGTC 230 389 620 Antisense
GGGTCTGGCGTGCCAAGTTTTGCTC 567 497 735 Antisense
TCCCATTGATCTCTTATTTTCCCAT 18 597 758 Antisense
TTTTCCCATCATTACGCTTTATTTG 175 677 774 Antisense
ATATTATGACGTGTTTCCCTGCACT 605 19 848 Antisense
TGCACTCGTTGATCCTTTTATTTCA 451 571 867 Antisense
Sequence Source Affymetrix Proprietary Database