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[177955_at]

Description T24C2.3 /REP_DB=WormBase Gene ID /WP=CE03717 /TR=Q22726 /GB=CAA92201.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 12.7
(-3)
A 		19.2
(-2.6)
A 		16.1
(-2.8)
A 		102.1
(3)
A 		89
B 14
(-2.8)
A 		16.5
(-1.8)
A 		28.6
(3)
A 		13.5
(-3)
A 		15
C 12.9
(-1.6)
A 		32.2
(3)
A 		15.7
(-0.9)
A 		7
(-3)
A 		25
avr 13.2
(-3) 		22.6
(-1) 		20.1
(-1.5) 		40.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 42.8
(3)
A 		13.1
(-1.8)
A 		14.3
(-1.6)
A 		5.7
(-3)
A 		11
(-2.1)
A 		8.9
(-2.5)
A 		37
B 14.6
(-1.7)
A 		37.8
(3)
A 		10
(-2.6)
A 		9
(-2.8)
A 		10.7
(-2.5)
A 		8
(-3)
A 		30
C 57.2
(3)
A 		15.1
(-1.8)
A 		21.6
(-1.1)
A 		8.2
(-2.6)
A 		4.7
(-3)
A 		49.7
(2.1)
A 		53
avr 38.2
(3) 		22
(-0.2) 		15.3
(-1.5) 		7.6
(-3) 		8.8
(-2.8) 		22.2
(-0.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.6
(-2.8)
A 		4.2
(-3)
A 		4.2
(-3)
A 		14.9
(3)
A 		11
B 4.5
(-0.4)
A 		4.1
(-1.1)
A 		6.6
(3)
A 		2.9
(-3)
A 		4
C 4.3
(-0.7)
A 		9.2
(3)
A 		5.5
(0.2)
A 		1.2
(-3)
A 		8
avr 4.5
(-3) 		5.8
(1.3) 		5.4
(0) 		6.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.9
(3)
A 		4.6
(-0.1)
A 		3.1
(-1.5)
A 		1.5
(-3)
A 		3.3
(-1.3)
A 		2.2
(-2.3)
A 		6
B 5.1
(-1.4)
A 		12.6
(3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		4.3
(-1.9)
A 		3
(-2.6)
A 		10
C 21.2
(3)
A 		4.6
(-2.1)
A 		5.5
(-1.8)
A 		1.6
(-3)
A 		1.5
(-3)
A 		16.6
(1.6)
A 		20
avr 11.4
(3) 		7.3
(0.4) 		3.7
(-1.8) 		1.8
(-3) 		3
(-2.3) 		7.3
(0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17593
Sequence Type Exemplar sequence
Representative Public ID T24C2.3 NCBI
Target Description T24C2.3 /REP_DB=WormBase Gene ID /WP=CE03717 /TR=Q22726 /GB=CAA92201.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078019 NCBI Caenorhabditis elegans T24C2.3 (T24C2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015292 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14543452:14544634:1 11/11 None
SNAP00000015287 ENSEMBL cdna:SNAP chromosome:CEL140:X:14543476:14544562:1 11/11 None
T24C2.3 ENSEMBL cdna:known chromosome:CEL140:X:14543476:14544562:1 gene:T24C2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14543475-14544562(+) 99.13 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C2.3
Entrez Gene 188840 Entrez gene
SwissProt Q22726 EMBL-EBI
WormBase CE03717 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92201 Hypothetical protein T24C2.3 [Caenorhabditis elegans] ref|NP_510420.1| T24C2.3 [Caenorhabditis elegans] 1.0E-153
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015292 1 277-296
Sequence
Target Sequence 
>C. ELEGANS:177955_AT
acacctgttcttgggccagcataatgttttagctgatgagattccgaaaacaattgctga
ttttgatatctgcaagaaatccgtcacaacgctcatcaaccgaaccaaaaattatacgga
caccacactgggtcaactggaagttttaagtgcagtagtccaaggaaatcggaaacaacc
cattggagattccaaacgttggacaagaaaaatgattgtgtccatcgaagccatgttcgt
agatcttgtgaagttcctaaaattgggcgatgacttggtcaagcgtaacacggctgctct
accactctccttcgatagttatgatgttccagaattgccagcatcatgtgatttcgtgtc
atatcaaatgcctcaacaattccactactatacaaatatgacatatccaaatcctaattt
gtattctccggattatcaatacccatccccaacatatcaaggcctcgcaacttgtttcaa
cataccaccatttgtgccggtttcagctgaacttctgaagcagttgcaagcgtacaccac
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCTGTTCTTGGGCCAGCATAAT 66 109 213 Antisense
AAGAAATCCGTCACAACGCTCATCA 460 153 286 Antisense
ATACGGACACCACACTGGGTCAACT 261 19 326 Antisense
GATTGTGTCCATCGAAGCCATGTTC 183 435 426 Antisense
TGGTCAAGCGTAACACGGCTGCTCT 562 551 488 Antisense
CTACCACTCTCCTTCGATAGTTATG 666 225 511 Antisense
ATGCCTCAACAATTCCACTACTATA 327 41 580 Antisense
TCCGGATTATCAATACCCATCCCCA 283 595 639 Antisense
TCAAGGCCTCGCAACTTGTTTCAAC 251 633 669 Antisense
ACATACCACCATTTGTGCCGGTTTC 34 105 692 Antisense
AAGCAGTTGCAAGCGTACACCACTT 508 149 730 Antisense
Sequence Source Affymetrix Proprietary Database