[Home] | [Total List]

[177954_at]

Description T26E4.1 /REP_DB=WormBase Gene ID /WP=CE16473 /TR=O45835 /GB=CAB03430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 9.7
(-1.3)
A 		2.1
(-3)
A 		29.3
(3)
A 		5.8
(-2.2)
A 		27
B 7.3
(-1.8)
A 		28.1
(3)
A 		6.6
(-1.9)
A 		1.9
(-3)
A 		26
C 9.4
(-2)
A 		6
(-3)
A 		9.9
(-1.8)
A 		25.5
(3)
A 		20
avr 8.8
(-3) 		12.1
(0) 		15.3
(3) 		11.1
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 17.1
(-2.1)
A 		17.4
(-2)
A 		72.3
(3)
A 		6.8
(-3)
A 		38.4
(-0.1)
A 		12.2
(-2.5)
A 		66
B 21.7
(3)
A 		5.8
(-2)
A 		16.2
(1.3)
A 		6.9
(-1.6)
A 		2.6
(-3)
A 		5.9
(-2)
A 		19
C 21.3
(0.5)
A 		32.7
(3)
A 		5.9
(-2.9)
A 		7.7
(-2.5)
A 		5.6
(-3)
A 		14.2
(-1.1)
A 		27
avr 20
(0.2) 		18.6
(-0.2) 		31.5
(3) 		7.1
(-3) 		15.5
(-0.9) 		10.8
(-2.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.5
(-0.5)
A 		0.5
(-3)
A 		7.7
(3)
A 		0.9
(-2.7)
A 		7
B 2.3
(-1.2)
A 		6.9
(3)
A 		1.5
(-2)
A 		0.4
(-3)
A 		7
C 3.1
(0.2)
A 		1.7
(-3)
A 		3.5
(1.2)
A 		4.3
(3)
A 		3
avr 3
(-0.1) 		3
(-0.1) 		4.2
(3) 		1.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.1
(-2.4)
A 		6.2
(-1.1)
A 		15.8
(3)
A 		1.7
(-3)
A 		11.6
(1.2)
A 		3
(-2.4)
A 		14
B 7.5
(3)
A 		1.9
(-2.3)
A 		3.9
(-0.4)
A 		1.8
(-2.3)
A 		1.1
(-3)
A 		2.2
(-2)
A 		6
C 7.9
(1.5)
A 		10
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		1.8
(-2.8)
A 		4.8
(-0.7)
A 		9
avr 6.2
(2) 		6
(1.8) 		7.1
(3) 		1.7
(-3) 		4.8
(0.4) 		3.3
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12825
Sequence Type Exemplar sequence
Representative Public ID T26E4.1 NCBI
Target Description T26E4.1 /REP_DB=WormBase Gene ID /WP=CE16473 /TR=O45835 /GB=CAB03430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074530 NCBI Caenorhabditis elegans T26E4.1 (T26E4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000017605 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15782277:15784595:1 10/11 None
T26E4.1 ENSEMBL cdna:known chromosome:CEL140:V:15782277:15783666:1 gene:T26E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15782276-15783666(+) 98.16 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.1
Entrez Gene 188927 Entrez gene
SwissProt O45835 EMBL-EBI
WormBase CE16473 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03430 Hypothetical protein T26E4.1 [Caenorhabditis elegans] ref|NP_506931.1| T26E4.1 [Caenorhabditis elegans] 0.0
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 5.0E-96
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 3.0E-88
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 5.0E-80
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 8.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.9E-26
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.9E-26
Sequence
Target Sequence 
>C. ELEGANS:177954_AT
tcagagcatcagttatccatcgggaaacggaaagaaaatgtatgttatattggatggagt
aggctacaacttttgcattactagcggcgaattattgtcatttattaaaactagtgagct
gcaaatcgatatgagcaaagtaaaatattgtgagccgccaagtactgtggaaactggaaa
aatttgtaattcaacgtcaataactgacggatgtactcaaatatttggaagcttggtgat
aggacctgaaaacgagcatttggtacaccaactaaatactgtagaagtgatattcggagg
tctggttgtcaataacactaatctgacaaatatcgattttctggaaagtctcaaatatat
ttatcatcttgatgacaaatccgctgtaatccaaatcgagaataaccccaacttgtccaa
cttctcatttcccagtctcgtcgttgcacagactttggcaaataccaaaattttatttag
taataataatgaaatacgcacatcggattccacgtattgcgatcgccttaagaacatgct
caata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAGCATCAGTTATCCATCGGGA 550 623 474 Antisense
ACAACTTTTGCATTACTAGCGGCGA 344 113 539 Antisense
GTGAGCCGCCAAGTACTGTGGAAAC 602 483 623 Antisense
GAAAACGAGCATTTGGTACACCAAC 40 355 721 Antisense
GATATTCGGAGGTCTGGTTGTCAAT 338 427 762 Antisense
ATCATCTTGATGACAAATCCGCTGT 677 29 836 Antisense
AAATCCGCTGTAATCCAAATCGAGA 116 119 850 Antisense
GTCTCGTCGTTGCACAGACTTTGGC 27 467 908 Antisense
GAAATACGCACATCGGATTCCACGT 194 363 964 Antisense
ATTCCACGTATTGCGATCGCCTTAA 480 5 980 Antisense
GATCGCCTTAAGAACATGCTCAATA 367 417 994 Antisense
Sequence Source Affymetrix Proprietary Database