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[177952_s_at]

Description K02E2.6 /REP_DB=WormBase Gene ID /WP=CE23845 /TR=Q9U3C4 /GB=CAB04550.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 64      6grp_total > 62      4grp_total > 10      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1236
1 2 3 4 range
A 748.9
(-3)
P 		939.1
(-1.4)
P 		772.7
(-2.8)
P 		1460.7
(3)
P 		712
B 861.9
(-2.7)
P 		861.4
(-2.7)
P 		812.5
(-3)
P 		1957.1
(3)
P 		1145
C 786.2
(-3)
P 		864.4
(-2.6)
P 		806.5
(-2.9)
P 		1985.3
(3)
P 		1199
avr 799
(-3) 		888.3
(-2.5) 		797.2
(-3) 		1801
(3) 		1004

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 602.8
(-3)
P 		928.8
(-0.2)
P 		1177.4
(1.9)
P 		1307.2
(3)
P 		876
(-0.7)
P 		679.6
(-2.3)
P 		704
B 714.2
(-3)
P 		737.3
(-2.6)
P 		1092.5
(3)
P 		1036.2
(2.1)
P 		902
(-0)
P 		790.9
(-1.8)
P 		378
C 879.5
(-0.2)
P 		684.7
(-3)
P 		1106.6
(3)
P 		980.7
(1.2)
P 		1105.1
(3)
P 		810.6
(-1.2)
P 		422
avr 732.2
(-3) 		783.6
(-2.2) 		1125.5
(3) 		1108
(2.7) 		961
(0.5) 		760.4
(-2.6) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 272.7
(3)
P 		203.8
(-2.8)
P 		202
(-3)
P 		213.8
(-2)
P 		71
B 274.9
(-0.7)
P 		212.7
(-2.4)
P 		188.3
(-3)
P 		417
(3)
P 		229
C 260.2
(-2.2)
P 		248.5
(-3)
P 		281.1
(-0.7)
P 		334.7
(3)
P 		86
avr 269.3
(-0.1) 		221.7
(-3) 		223.8
(-2.9) 		321.8
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 111.1
(-3)
P 		330.3
(3)
P 		256.4
(1)
P 		331.5
(3)
P 		264.3
(1.2)
P 		165.5
(-1.5)
P 		220
B 248.5
(-2.8)
P 		245.4
(-3)
P 		265.3
(-2)
P 		274.5
(-1.6)
P 		366.5
(3)
P 		294.9
(-0.5)
P 		121
C 326
(1.8)
P 		208.9
(-2.6)
P 		281.7
(0.2)
P 		197.2
(-3)
P 		357.6
(3)
P 		271.4
(-0.2)
P 		160
avr 228.5
(-3) 		261.5
(-1) 		267.8
(-0.7) 		267.7
(-0.7) 		329.5
(3) 		243.9
(-2.1) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177952_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14366
Sequence Type Exemplar sequence
Representative Public ID K02E2.6 NCBI
Target Description K02E2.6 /REP_DB=WormBase Gene ID /WP=CE23845 /TR=Q9U3C4 /GB=CAB04550.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075526 NCBI Caenorhabditis elegans K02E2.6 (K02E2.6) mRNA, complete cds. 11/11 None
SNAP00000027378 ENSEMBL cdna:SNAP chromosome:CEL140:V:20378720:20379157:1 11/11 None
GENEFINDER00000027385 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20378720:20379157:1 11/11 None
K02E2.6.2 ENSEMBL cdna:known chromosome:CEL140:V:20378720:20380017:1 gene:K02E2.6 11/11 None
K02E2.6.1 ENSEMBL cdna:known chromosome:CEL140:V:20378720:20380017:1 gene:K02E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20378719-20379460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E2.6
Entrez Gene 180335 Entrez gene
SwissProt Q9U3C4 EMBL-EBI
WormBase CE23845 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04550 Hypothetical protein K02E2.6 [Caenorhabditis elegans] ref|NP_507927.1| K02E2.6 [Caenorhabditis elegans] 2.0E-57
blast CAB04550 Hypothetical protein K02E2.6 [Caenorhabditis elegans] ref|NP_507927.1| K02E2.6 [Caenorhabditis elegans] 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:177952_S_AT
ataccgaacattaacaccatcctacacaagaacaacagaggaagattaccagtggtacaa
gtgggagtaaacggaaaagtcgttcacgtcctcctcgacacaggagccggaatcagttac
ttgccaatttcaaaaatcaatctgaaagatctggacccaacctatcaactacaagctcac
gcagcgaacggaacacccatcttgttccatggaatcgtgaaactagctcttcgaatggga
aatcgtgtgttcgaacacactctacatgtttcagacgacaaagattgccctaccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCGAACATTAACACCATCCTAC 466 23 43 Antisense
AACACCATCCTACACAAGAACAACA 641 135 55 Antisense
TCCTCCTCGACACAGGAGCCGGAAT 604 591 131 Antisense
GGAGCCGGAATCAGTTACTTGCCAA 581 521 145 Antisense
AATCTGAAAGATCTGGACCCAACCT 329 151 181 Antisense
CAACCTATCAACTACAAGCTCACGC 310 187 200 Antisense
AAGCTCACGCAGCGAACGGAACACC 240 149 215 Antisense
ACGGAACACCCATCTTGTTCCATGG 587 91 230 Antisense
GAATCGTGAAACTAGCTCTTCGAAT 490 329 254 Antisense
ACACACTCTACATGTTTCAGACGAC 476 107 297 Antisense
AGACGACAAAGATTGCCCTACCGAA 505 71 315 Antisense
Sequence Source Affymetrix Proprietary Database