[Home] | [Total List]

[177950_s_at]

Description W01A8.1 /REP_DB=WormBase Gene ID /WP=CE18303 /TR=Q23095 /GB=CAA95854.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 69      6grp_total > 68      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6116
1 2 3 4 range
A 1069.6
(-2.8)
P 		822.6
(-3)
P 		831.9
(-3)
P 		6800.1
(3)
P 		5978
B 1017.7
(-2.6)
P 		684.3
(-3)
P 		842.3
(-2.8)
P 		6177.1
(3)
P 		5493
C 1043.6
(-2.8)
P 		859.8
(-3)
P 		859.2
(-3)
P 		6595.5
(3)
P 		5736
avr 1043.6
(-2.7) 		788.9
(-3) 		844.5
(-2.9) 		6524.2
(3) 		5735

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2620
1 2 3 4 5 6 range
A 2030
(-2.2)
P 		1982.7
(-2.3)
P 		1720.5
(-3)
P 		1840.9
(-2.7)
P 		1790.8
(-2.8)
P 		4047.4
(3)
P 		2327
B 1749.4
(-2)
P 		1427.9
(-3)
P 		1839.7
(-1.7)
P 		1725.3
(-2.1)
P 		1597.2
(-2.5)
P 		3334.7
(3)
P 		1907
C 2654.1
(0.9)
P 		1675.8
(-2.3)
P 		2266.5
(-0.3)
P 		1451.2
(-3)
P 		2158.1
(-0.7)
P 		3292.1
(3)
P 		1841
avr 2144.5
(-1.5) 		1695.5
(-2.9) 		1942.2
(-2.1) 		1672.5
(-3) 		1848.7
(-2.4) 		3558.1
(3) 		1886
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1147
1 2 3 4 range
A 389.5
(-1.5)
P 		178.6
(-3)
P 		217.5
(-2.7)
P 		995.4
(3)
P 		817
B 324.5
(-2.2)
P 		169
(-3)
P 		195.2
(-2.9)
P 		1316.3
(3)
P 		1147
C 345.5
(-2.3)
P 		247.2
(-3)
P 		299.5
(-2.6)
P 		1112.1
(3)
P 		865
avr 353.2
(-2) 		198.3
(-3) 		237.4
(-2.8) 		1141.3
(3) 		943

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 952
1 2 3 4 5 6 range
A 374.2
(-3)
P 		705.1
(0.2)
P 		374.7
(-3)
P 		466.9
(-2.1)
P 		540.4
(-1.4)
P 		985.4
(3)
P 		611
B 608.7
(-1.8)
P 		475.3
(-2.8)
P 		446.7
(-3)
P 		457
(-2.9)
P 		648.9
(-1.5)
P 		1243.5
(3)
P 		797
C 983.8
(2.1)
P 		511.3
(-1.4)
P 		576.9
(-0.9)
P 		291.8
(-3)
P 		698.3
(0)
P 		1102
(3)
P 		810
avr 655.6
(-0.9) 		563.9
(-1.6) 		466.1
(-2.5) 		405.2
(-3) 		629.2
(-1.1) 		1110.3
(3) 		705
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177950_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2444
Sequence Type Exemplar sequence
Representative Public ID W01A8.1 NCBI
Target Description W01A8.1 /REP_DB=WormBase Gene ID /WP=CE18303 /TR=Q23095 /GB=CAA95854.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026476(11), NM_001026475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026476 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-28) (mdt-28) mRNA, complete cds. 11/11 None
NM_001026475 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-28) (mdt-28) mRNA, complete cds. 11/11 None
SNAP00000018608 ENSEMBL cdna:SNAP chromosome:CEL140:I:7065340:7066749:1 11/11 None
GENEFINDER00000018617 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7065340:7066749:1 11/11 None
W01A8.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:7065302:7067303:1 gene:W01A8.1 11/11 None
W01A8.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:7065332:7067459:1 gene:W01A8.1 11/11 None
W01A8.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:7065332:7067307:1 gene:W01A8.1 11/11 None
W01A8.1a ENSEMBL cdna:known chromosome:CEL140:I:7065340:7067427:1 gene:W01A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7065270-7067358(+) 100.0 100.0
Public Domain and Genome References
Ensembl W01A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19105 Hypothetical protein W01A8.1b [Caenorhabditis elegans] ref|NP_001021647.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
blast CAA95854 Hypothetical protein W01A8.1a [Caenorhabditis elegans] ref|NP_001021646.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177950_S_AT
tgaaacacattcaatcaacctccgagcaactctcaacacaacttcaatcattgcgtgaga
agggacaaaacgttttcggtgatggaactaagattgactccaccattgactacttggaga
acttgaagaagaacttcacagatgctgaggatgtttacaaagtccgcgacgaggttctga
acgagggacgtcaacggatcgccgagctttcaacctggacgactagcctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACACATTCAATCAACCTCCGA 344 573 917 Antisense
ATTCAATCAACCTCCGAGCAACTCT 509 11 925 Antisense
TCCGAGCAACTCTCAACACAACTTC 116 595 937 Antisense
TCAACACAACTTCAATCATTGCGTG 552 629 949 Antisense
GATGGAACTAAGATTGACTCCACCA 387 407 997 Antisense
TTGACTCCACCATTGACTACTTGGA 607 705 1010 Antisense
GAGGATGTTTACAAAGTCCGCGACG 78 403 1063 Antisense
AAGTCCGCGACGAGGTTCTGAACGA 450 155 1076 Antisense
GAACGAGGGACGTCAACGGATCGCC 309 347 1095 Antisense
TCAACGGATCGCCGAGCTTTCAACC 687 629 1107 Antisense
TTTCAACCTGGACGACTAGCCTTTT 97 671 1124 Antisense
Sequence Source Affymetrix Proprietary Database