[Home] | [Total List]

[177949_at]

Description W01A8.1 /REP_DB=WormBase Gene ID /WP=CE18303 /TR=Q23095 /GB=CAA95854.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 88      6grp_total > 68      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4297
1 2 3 4 range
A 838.2
(-2.3)
P 		503
(-2.8)
P 		408.1
(-3)
P 		4142.2
(3)
P 		3734
B 737.9
(-2.7)
P 		751.8
(-2.7)
P 		529
(-3)
P 		4704.9
(3)
P 		4176
C 1041.2
(-2)
P 		606.7
(-2.8)
P 		523.2
(-3)
P 		3748.5
(3)
P 		3225
avr 872.4
(-2.4) 		620.5
(-2.8) 		486.8
(-3) 		4198.5
(3) 		3712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1655
1 2 3 4 5 6 range
A 935.9
(-3)
P 		1438
(-1)
P 		940.9
(-3)
P 		1183.1
(-2)
P 		1042.6
(-2.6)
P 		2439.3
(3)
P 		1503
B 860.6
(-3)
P 		907.5
(-2.8)
P 		947.6
(-2.6)
P 		935.9
(-2.6)
P 		1295.2
(-0.8)
P 		2041.8
(3)
P 		1181
C 2236.6
(2.7)
P 		784.7
(-3)
P 		1705.4
(0.6)
P 		974.6
(-2.3)
P 		1313.1
(-0.9)
P 		2307.2
(3)
P 		1523
avr 1344.4
(-1.5) 		1043.4
(-2.9) 		1198
(-2.2) 		1031.2
(-3) 		1217
(-2.1) 		2262.8
(3) 		1232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 896
1 2 3 4 range
A 305.2
(-0.6)
P 		109.2
(-3)
P 		106.7
(-3)
P 		606.3
(3)
P 		500
B 235.3
(-2.2)
P 		185.7
(-2.6)
P 		122.6
(-3)
P 		1002.6
(3)
P 		880
C 344.7
(-0.8)
P 		174.4
(-3)
P 		182.4
(-2.9)
P 		632.1
(3)
P 		458
avr 295.1
(-1.4) 		156.4
(-2.8) 		137.2
(-3) 		747
(3) 		610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 172.5
(-3)
P 		511.4
(1.8)
P 		204.9
(-2.5)
P 		300.1
(-1.2)
P 		314.6
(-1)
P 		593.9
(3)
P 		421
B 299.4
(-2.2)
P 		302.1
(-2.2)
P 		230.1
(-3)
P 		247.9
(-2.8)
P 		526.2
(0.3)
P 		761.4
(3)
P 		531
C 829
(3)
P 		239.4
(-2.6)
P 		434
(-0.7)
P 		196
(-3)
P 		424.9
(-0.8)
P 		772.3
(2.5)
P 		633
avr 433.6
(-0.6) 		351
(-1.7) 		289.7
(-2.5) 		248
(-3) 		421.9
(-0.7) 		709.2
(3) 		461
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2444
Sequence Type Exemplar sequence
Representative Public ID W01A8.1 NCBI
Target Description W01A8.1 /REP_DB=WormBase Gene ID /WP=CE18303 /TR=Q23095 /GB=CAA95854.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026476(10), NM_001026475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026476 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-28) (mdt-28) mRNA, complete cds. 10/11 None
NM_001026475 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-28) (mdt-28) mRNA, complete cds. 11/11 None
W01A8.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:7065332:7067459:1 gene:W01A8.1 11/11 None
W01A8.1a ENSEMBL cdna:known chromosome:CEL140:I:7065340:7067427:1 gene:W01A8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018608 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018617 8/11 Cross Hyb Matching Probes None
W01A8.1b.3 8/11 Cross Hyb Matching Probes None
W01A8.1b.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7065270-7067358(+) 100.0 100.0
Public Domain and Genome References
Ensembl W01A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19105 Hypothetical protein W01A8.1b [Caenorhabditis elegans] ref|NP_001021647.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
blast CAA95854 Hypothetical protein W01A8.1a [Caenorhabditis elegans] ref|NP_001021646.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
blast CAE65688 Hypothetical protein CBG10763 [Caenorhabditis briggsae] 1.0E-175
Sequence
Target Sequence 
>C. ELEGANS:177949_AT
cctcaccatcggacagcgagtcaaaaatctggcttcactgatcgtccaaggagtatctaa
caaggcacatgatcatgttatcgatccaatcaacgagagagcccgtaattatcttgagca
gctcagccaatccttcgtattgctagacatcgtccgtgagaagaaaacgtgggtcataga
gaagtcaaacgagctctccacatctgtctttgatttcaagaaaacacttgaggaagaggc
acaaaaatacaaagttgctccagaagagatgttgatgaaacacattcaatcaacctccga
gcaactctcaacacaacttcaatcattgcgtgagaagggacaaaacgttttcggtgatgg
aactaagattgactccaccattgactacttggagaacttgaagaagaacttcacagatgc
tgaggatgtttacaaagtccgcgacgaggttctgaacgagggacgtcaacggatcgccga
gctttcaacctggacgactagccttttgattatctcggccgaatggcaatttgaacctga
agatctactaatcgaagagctctacttcgatgcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACCATCGGACAGCGAGTCAAA 191 267 642 Antisense
AAATCTGGCTTCACTGATCGTCCAA 24 119 666 Antisense
GTCCAAGGAGTATCTAACAAGGCAC 659 475 685 Antisense
GCCCGTAATTATCTTGAGCAGCTCA 115 285 742 Antisense
CTCAGCCAATCCTTCGTATTGCTAG 63 229 763 Antisense
GTATTGCTAGACATCGTCCGTGAGA 271 453 778 Antisense
AGAAGTCAAACGAGCTCTCCACATC 360 75 821 Antisense
CTCTCCACATCTGTCTTTGATTTCA 12 233 835 Antisense
CTAGCCTTTTGATTATCTCGGCCGA 203 225 1139 Antisense
CGGCCGAATGGCAATTTGAACCTGA 171 241 1157 Antisense
CGAAGAGCTCTACTTCGATGCGCCA 425 253 1194 Antisense
Sequence Source Affymetrix Proprietary Database