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[177948_at]

Description F44A6.3 /REP_DB=WormBase Gene ID /WP=CE03324 /TR=Q20385 /GB=CAA90723.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 38.3
(-3)
A 		60.3
(3)
P 		51.6
(0.6)
P 		51.2
(0.5)
P 		22
B 30.3
(-3)
A 		79.9
(3)
P 		67
(1.4)
A 		53.6
(-0.2)
P 		50
C 53.3
(-3)
A 		60.4
(-2.6)
P 		61.9
(-2.5)
A 		149.2
(3)
P 		96
avr 40.6
(-3) 		66.9
(0.6) 		60.2
(-0.3) 		84.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 74.2
(3)
P 		55.7
(0.9)
A 		57.4
(1.1)
P 		22.3
(-3)
A 		47.1
(-0.1)
A 		43.6
(-0.5)
A 		52
B 74.4
(3)
P 		29.3
(-3)
A 		50
(-0.2)
A 		57.2
(0.7)
P 		35
(-2.2)
P 		40.2
(-1.5)
A 		45
C 82.2
(2.3)
M 		48.7
(-1.9)
P 		87.9
(3)
A 		58.8
(-0.6)
M 		43.7
(-2.5)
A 		39.8
(-3)
A 		48
avr 76.9
(3) 		44.6
(-2.4) 		65.1
(1) 		46.1
(-2.2) 		41.9
(-2.9) 		41.2
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.9
(3)
A 		13.1
(2.3)
P 		13.5
(2.6)
P 		7.5
(-3)
P 		6
B 9.7
(-3)
A 		19.7
(3)
P 		15.5
(0.5)
A 		11.4
(-2)
P 		10
C 17.6
(-2.8)
A 		17.4
(-3)
P 		21.6
(0.2)
A 		25.2
(3)
P 		8
avr 13.7
(-3) 		16.7
(2.6) 		16.9
(3) 		14.7
(-1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.7
(0.4)
P 		19.8
(3)
A 		12.5
(-0.1)
P 		5.7
(-3)
A 		14.2
(0.6)
A 		10.6
(-0.9)
A 		14
B 25.9
(3)
P 		9.8
(-3)
A 		12.1
(-2.1)
A 		15.1
(-1)
P 		14.2
(-1.4)
P 		15
(-1.1)
A 		16
C 30.5
(3)
M 		14.9
(-2)
P 		22.4
(0.4)
A 		11.8
(-3)
M 		14.1
(-2.3)
A 		13.3
(-2.5)
A 		19
avr 23.4
(3) 		14.8
(-1.1) 		15.7
(-0.7) 		10.9
(-3) 		14.2
(-1.4) 		13
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16521
Sequence Type Exemplar sequence
Representative Public ID F44A6.3 NCBI
Target Description F44A6.3 /REP_DB=WormBase Gene ID /WP=CE03324 /TR=Q20385 /GB=CAA90723.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077314 NCBI Caenorhabditis elegans F44A6.3 (F44A6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000009278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10212699:10214093:1 11/11 None
F44A6.3 ENSEMBL cdna:known chromosome:CEL140:X:10212699:10214093:1 gene:F44A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10212698-10214093(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44A6.3
Entrez Gene 185723 Entrez gene
SwissProt Q20385 EMBL-EBI
WormBase CE03324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90723 Hypothetical protein F44A6.3 [Caenorhabditis elegans] ref|NP_509715.1| F44A6.3 [Caenorhabditis elegans] 1.0E-71
blast CAE70541 Hypothetical protein CBG17179 [Caenorhabditis briggsae] 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:177948_AT
atggctcatacagtgtttccattcaatgattattttcgggtcactttcaatggttcactt
cttccttctcagagtcaatccggcgaaatcatacctccagtattctcagattcgcctctc
aaaacaattgtattggaggacgcaccgagtattcctaattggagaaacaaagaaaactct
accttattaaaaccatccctttttattgcaaattttgaaagtaagtctgtgctcaacata
caattgcattctactcaattgactccttcaccaacacccccagaagaaaatcgtaaaaat
tacaactgctcttttcctgagacaacaaacaataatacagacgccaaatatctcaattca
tcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCATACAGTGTTTCCATTCA 423 53 13 Antisense
TTCGGGTCACTTTCAATGGTTCACT 471 695 47 Antisense
ACTTCTTCCTTCTCAGAGTCAATCC 451 103 69 Antisense
GTCAATCCGGCGAAATCATACCTCC 613 463 86 Antisense
AAATCATACCTCCAGTATTCTCAGA 591 117 98 Antisense
TATTCTCAGATTCGCCTCTCAAAAC 608 663 113 Antisense
GGACGCACCGAGTATTCCTAATTGG 294 513 150 Antisense
GCATTCTACTCAATTGACTCCTTCA 623 307 258 Antisense
CACCAACACCCCCAGAAGAAAATCG 370 203 281 Antisense
ACAACTGCTCTTTTCCTGAGACAAC 336 113 314 Antisense
GACGCCAAATATCTCAATTCATCAG 401 381 352 Antisense
Sequence Source Affymetrix Proprietary Database