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[177947_at]

Description F59A1.6 /REP_DB=WormBase Gene ID /WP=CE18790 /TR=Q9XUV9 /GB=CAB04534.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 30.8
(0.8)
A 		9.6
(-2.3)
A 		4.6
(-3)
A 		46.1
(3)
A 		42
B 51.4
(3)
A 		29.6
(-1.2)
A 		37.5
(0.3)
A 		20
(-3)
A 		31
C 42.1
(-0.6)
A 		40.4
(-0.7)
A 		3.6
(-3)
A 		98.3
(3)
P 		95
avr 41.4
(1) 		26.5
(-1.3) 		15.2
(-3) 		54.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 21.8
(0.2)
A 		37.2
(3)
A 		16.6
(-0.7)
A 		4.2
(-3)
A 		29.6
(1.6)
A 		31.3
(1.9)
A 		33
B 16.7
(-3)
A 		54.9
(3)
A 		18.1
(-2.8)
A 		36.2
(0.1)
A 		36.8
(0.2)
A 		26.8
(-1.4)
A 		38
C 52.8
(3)
A 		29.5
(-0.3)
A 		24.8
(-0.9)
A 		9.9
(-3)
A 		33.5
(0.3)
A 		24.9
(-0.9)
A 		43
avr 30.4
(0.4) 		40.5
(3) 		19.8
(-2.2) 		16.8
(-3) 		33.3
(1.2) 		27.7
(-0.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.2
(3)
A 		2.1
(-2.5)
A 		1.2
(-3)
A 		6.8
(0.4)
A 		10
B 16.4
(3)
A 		7.3
(-1.5)
A 		8.7
(-0.8)
A 		4.3
(-3)
A 		12
C 13.9
(1.9)
A 		11.6
(1.1)
A 		1.2
(-3)
A 		16.6
(3)
P 		15
avr 13.8
(3) 		7
(-1) 		3.7
(-3) 		9.2
(0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4
(-1.6)
A 		13.2
(3)
A 		3.6
(-1.8)
A 		1.1
(-3)
A 		8.9
(0.9)
A 		7.6
(0.2)
A 		12
B 5.8
(-2.4)
A 		18.3
(3)
A 		4.4
(-3)
A 		9.6
(-0.8)
A 		15
(1.6)
A 		10
(-0.6)
A 		14
C 19.6
(3)
A 		9
(-0.6)
A 		6.3
(-1.5)
A 		2
(-3)
A 		10.8
(0)
A 		8.3
(-0.9)
A 		18
avr 9.8
(0.6) 		13.5
(3) 		4.8
(-2.6) 		4.2
(-3) 		11.6
(1.8) 		8.6
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12638
Sequence Type Exemplar sequence
Representative Public ID F59A1.6 NCBI
Target Description F59A1.6 /REP_DB=WormBase Gene ID /WP=CE18790 /TR=Q9XUV9 /GB=CAB04534.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075073 NCBI Caenorhabditis elegans F59A1.6 (F59A1.6) mRNA, complete cds. 11/11 None
SNAP00000002324 ENSEMBL cdna:SNAP chromosome:CEL140:V:17687805:17688650:1 11/11 None
GENEFINDER00000002329 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17687805:17689304:1 11/11 None
F59A1.6 ENSEMBL cdna:known chromosome:CEL140:V:17687805:17688650:1 gene:F59A1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17687804-17688650(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.6
Entrez Gene 186559 Entrez gene
SwissProt Q9XUV9 EMBL-EBI
WormBase CE18790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04534 Hypothetical protein F59A1.6 [Caenorhabditis elegans] ref|NP_507474.1| F59A1.6 [Caenorhabditis elegans] 3.0E-54
blast CAB04534 Hypothetical protein F59A1.6 [Caenorhabditis elegans] ref|NP_507474.1| F59A1.6 [Caenorhabditis elegans] 1.0E-49
blast CAE61711 Hypothetical protein CBG05660 [Caenorhabditis briggsae] 3.0E-39
blast CAE61711 Hypothetical protein CBG05660 [Caenorhabditis briggsae] 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:177947_AT
gcttctgcttattttctctgcaattttcgttcttgccgctagtgctttcgctgatattca
agaggctcagggacaattctgcgagatgtgtaataagaattgggaggagaaagtgccgaa
gagttgggcagaaatgacgggatatatgaaccttgcgtgcttccaacttcacaaaactct
caagccaaaatgtatggctctggtgaacaatttcaacattggcaacgtttttgacacatt
ccgtcctcaacttatcgatttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTGCTTATTTTCTCTGCAATT 147 307 18 Antisense
TCTGCAATTTTCGTTCTTGCCGCTA 198 609 34 Antisense
CCGCTAGTGCTTTCGCTGATATTCA 396 263 53 Antisense
GAGGCTCAGGGACAATTCTGCGAGA 533 405 79 Antisense
GATATATGAACCTTGCGTGCTTCCA 624 425 158 Antisense
GCGTGCTTCCAACTTCACAAAACTC 110 293 172 Antisense
AACTTCACAAAACTCTCAAGCCAAA 349 139 182 Antisense
GTATGGCTCTGGTGAACAATTTCAA 159 457 209 Antisense
AATTTCAACATTGGCAACGTTTTTG 453 175 226 Antisense
CAACGTTTTTGACACATTCCGTCCT 515 183 240 Antisense
CCGTCCTCAACTTATCGATTTCGGA 412 265 258 Antisense
Sequence Source Affymetrix Proprietary Database