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[177946_at] 7TM chemoreceptor, sri family

Description T22H2.3 /REP_DB=WormBase Gene ID /WP=CE14000 /TR=O18110 /GB=CAB04750.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 05      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.3
(-0.9)
A 		4.2
(-3)
A 		5
(-2.2)
A 		10.1
(3)
A 		6
B 10.2
(1.2)
A 		4
(-3)
A 		5.6
(-1.9)
A 		12.9
(3)
A 		9
C 3
(-3)
A 		3.2
(-2.7)
A 		5.4
(0.1)
A 		7.7
(3)
A 		5
avr 6.5
(-0.5) 		3.8
(-3) 		5.3
(-1.6) 		10.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.6
(-3)
A 		4.4
(-2)
A 		4.2
(-2.3)
A 		8.4
(3)
A 		5
(-1.3)
A 		5.2
(-1)
A 		5
B 5.1
(0.2)
A 		7.2
(3)
A 		3.6
(-1.8)
A 		3.2
(-2.3)
A 		2.8
(-2.9)
A 		2.7
(-3)
A 		5
C 4
(-1.5)
A 		5.1
(-0.5)
A 		7
(1.3)
A 		8.9
(3)
A 		4.5
(-1)
A 		2.3
(-3)
A 		7
avr 4.2
(-1.6) 		5.6
(0.9) 		4.9
(-0.4) 		6.8
(3) 		4.1
(-1.8) 		3.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(3)
A 		0.9
(-3)
A 		1.3
(-1.3)
A 		1.5
(-0.4)
A 		1
B 3.3
(3)
A 		1
(-3)
A 		1.3
(-2.2)
A 		2.7
(1.4)
A 		2
C 1
(-2.4)
A 		0.9
(-3)
A 		1.9
(3)
A 		1.3
(-0.6)
A 		1
avr 2.2
(3) 		0.9
(-3) 		1.5
(-0.2) 		1.8
(1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.5
(0.4)
A 		0.9
(-2.1)
A 		2.1
(3)
A 		1.5
(0.4)
A 		1.3
(-0.4)
A 		1
B 1.8
(0.6)
A 		2.4
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.2
(-1.8)
A 		1
(-2.6)
A 		2
C 1.5
(1.2)
A 		1.6
(1.8)
A 		1.8
(3)
A 		1.8
(3)
A 		1.4
(0.6)
A 		0.8
(-3)
A 		1
avr 1.3
(-0.8) 		1.8
(3) 		1.2
(-1.5) 		1.6
(1.5) 		1.4
(-0) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1555
Sequence Type Exemplar sequence
Representative Public ID T22H2.3 NCBI
Target Description T22H2.3 /REP_DB=WormBase Gene ID /WP=CE14000 /TR=O18110 /GB=CAB04750.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060578 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-11) (sri-11) mRNA, complete cds. 11/11 None
GENEFINDER00000038050 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11703803:11706065:-1 11/11 None
T22H2.3 ENSEMBL cdna:known chromosome:CEL140:I:11703803:11706065:-1 gene:T22H2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038042 6/11 Cross Hyb Matching Probes None
SNAP00000038043 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11703733-11705996(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-11
Ensembl T22H2.3
Entrez Gene 188765 Entrez gene
SwissProt O18110 EMBL-EBI
WormBase CE33706 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04750 Hypothetical protein T22H2.3 [Caenorhabditis elegans] ref|NP_492979.2| Serpentine Receptor, class I family member (sri-11) [Caenorhabditis elegans] 0.0
blast CAB04753 Hypothetical protein T22H2.1 [Caenorhabditis elegans] ref|NP_492980.2| Serpentine Receptor, class I family member (sri-12) [Caenorhabditis elegans] 1.0E-140
blast CAE69304 Hypothetical protein CBG15360 [Caenorhabditis briggsae] 1.0E-139
blast CAE69304 Hypothetical protein CBG15360 [Caenorhabditis briggsae] 1.0E-122
blast CAB04753 Hypothetical protein T22H2.1 [Caenorhabditis elegans] ref|NP_492980.2| Serpentine Receptor, class I family member (sri-12) [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.0E-86
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.8E-30
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492979.2 6 15-37,57-79,94-116,136-153,192-214,235-257
T22H2.3 6 15-37,57-79,94-116,136-153,192-214,235-257
GENEFINDER00000038050 4 15-37,109-126,165-187,208-230
Sequence
Target Sequence 
>C. ELEGANS:177946_AT
tgtggaactcgagtctgacctaccagcaaaaatatgattttgtgaagaaaaactacccac
aatgtctgttttggatggcttttgacgggtttgaagcctacgatccacaccagaatccat
ggatgtttgtgacagggatcggagctttgatttgggtgtttttcattgtttggtactgtg
tgtaccttggtgttcacacaatgataattctacagcgtctccgccagcacatgtcctccc
agacctataacatgcaccgggcggctcttttcagcttgagcatgcaaatggctctgcccg
gtgggctcattgtgatccccaaaaatattatgttgttcattgtgattggtgaagctactc
atcttcaagaacttgccaccaacatgacctttctaatggcttcccattcaatgtgccaat
gctccacaatgattctgagcaactcagtttatcggcgaattttcagagaaaaattggcta
aaactttcagactgaaatttctggctccggagtcacacatgtcgtcgattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGAACTCGAGTCTGACCTACCA 623 551 533 Antisense
TGACGGGTTTGAAGCCTACGATCCA 307 567 615 Antisense
GTACTGTGTGTACCTTGGTGTTCAC 310 459 705 Antisense
AATGATAATTCTACAGCGTCTCCGC 174 165 732 Antisense
CAGACCTATAACATGCACCGGGCGG 445 203 772 Antisense
GCGGCTCTTTTCAGCTTGAGCATGC 149 293 793 Antisense
TGAGCATGCAAATGGCTCTGCCCGG 398 569 809 Antisense
CTCTGCCCGGTGGGCTCATTGTGAT 560 231 824 Antisense
AACATGACCTTTCTAATGGCTTCCC 528 131 913 Antisense
GGCTTCCCATTCAATGTGCCAATGC 490 537 930 Antisense
CGGAGTCACACATGTCGTCGATTGA 211 243 1040 Antisense
Sequence Source Affymetrix Proprietary Database