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[177945_s_at]

Description F36D1.1 /REP_DB=WormBase Gene ID /WP=CE19832 /TR=Q9XV35 /GB=CAB04312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 71      6grp_total > 14      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 282.7
(-2.3)
P 		272.3
(-3)
P 		313.5
(-0.4)
P 		367
(3)
P 		95
B 366.4
(0.3)
P 		292.7
(-2.1)
P 		265.6
(-3)
P 		450.4
(3)
P 		185
C 350.2
(-1.2)
P 		378.5
(-0.3)
P 		297
(-3)
P 		478
(3)
P 		181
avr 333.1
(-1.2) 		314.5
(-2) 		292
(-3) 		431.8
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 432.2
(3)
P 		328.3
(0.2)
P 		243.8
(-2.2)
P 		277.1
(-1.2)
P 		258.5
(-1.8)
P 		213.1
(-3)
P 		219
B 331.2
(1.2)
P 		364.3
(3)
P 		318
(0.4)
P 		320.8
(0.6)
P 		268.3
(-2.4)
P 		256.7
(-3)
P 		108
C 314.8
(-1.1)
P 		297.3
(-3)
P 		347.8
(2.6)
P 		351.7
(3)
P 		319.5
(-0.6)
P 		314.7
(-1.1)
P 		54
avr 359.4
(3) 		330
(1.2) 		303.2
(-0.4) 		316.5
(0.4) 		282.1
(-1.7) 		261.5
(-3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 102.9
(3)
P 		59.1
(-2.3)
P 		82
(0.5)
P 		53.7
(-3)
P 		49
B 116.8
(3)
P 		72.3
(-1.8)
P 		61.6
(-3)
P 		96
(0.7)
P 		55
C 115.9
(3)
P 		108.8
(1.8)
P 		103.5
(0.9)
P 		80.6
(-3)
P 		35
avr 111.9
(3) 		80.1
(-2.4) 		82.4
(-2) 		76.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 79.7
(-0.4)
P 		116.7
(3)
P 		53.1
(-2.9)
P 		70.3
(-1.3)
P 		78
(-0.6)
P 		51.9
(-3)
P 		65
B 115.2
(2.2)
P 		121.2
(3)
P 		77.2
(-3)
P 		85
(-1.9)
P 		109
(1.3)
P 		95.7
(-0.5)
P 		44
C 116.7
(3)
P 		90.7
(-0.4)
P 		88.5
(-0.7)
P 		70.7
(-3)
P 		103.4
(1.3)
P 		105.3
(1.5)
P 		46
avr 103.9
(2.1) 		109.5
(3) 		72.9
(-3) 		75.3
(-2.6) 		96.8
(0.9) 		84.3
(-1.1) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1856
Sequence Type Exemplar sequence
Representative Public ID F36D1.1 NCBI
Target Description F36D1.1 /REP_DB=WormBase Gene ID /WP=CE19832 /TR=Q9XV35 /GB=CAB04312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060495 NCBI Caenorhabditis elegans F36D1.1 (F36D1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013633 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11284729:11288138:-1 11/11 None
F36D1.1 ENSEMBL cdna:known chromosome:CEL140:I:11284616:11288144:-1 gene:F36D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11284659-11288069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.1
Entrez Gene 173019 Entrez gene
SwissProt Q9XV35 EMBL-EBI
WormBase CE19832 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04312 Hypothetical protein F36D1.1 [Caenorhabditis elegans] ref|NP_492896.1| F36D1.1 [Caenorhabditis elegans] 1.0E-145
blast CAE73059 Hypothetical protein CBG20429 [Caenorhabditis briggsae] 3.0E-62
blast CAE58941 Hypothetical protein CBG02209 [Caenorhabditis briggsae] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177945_S_AT
aaggctcggcgacacgtgtgagcacacctatgagttggccccgaattccacgtcgtgtgg
gcagagagcacaaatctcctatgagcccacatcaactgaggagaaaatgttccaaatgtt
caataatcaacctccaccgcaattatcacaacagtcgatgattgactcctcacagattgc
tacgtgctccaatgaaccaaaaatgacgtcatcatcaacattcgtgacgtcatccacgtc
tttaaaacgtggcgttcactatagtccgactagaagcccaaatgggtcgtcaagtgggtt
ggaagaggagctggaagatgaggatgagcagccgggcaggaagaagtcatgccgccgcca
ggtgtccaatattcagccgatgcaagttattaccactccgccagtcgcccatcaagacga
atttgatcattttggagcaatggttgccgcgaatttgcggagaatagccaatgaacaagg
tcggatgaatgctctgcgagttcaacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCTCGGCGACACGTGTGAGCAC 208 161 345 Antisense
TGTGAGCACACCTATGAGTTGGCCC 676 555 361 Antisense
GCCCCGAATTCCACGTCGTGTGGGC 532 279 382 Antisense
GAGCACAAATCTCCTATGAGCCCAC 335 389 410 Antisense
CTCCACCGCAATTATCACAACAGTC 192 237 476 Antisense
GTCGATGATTGACTCCTCACAGATT 433 473 498 Antisense
TCCTCACAGATTGCTACGTGCTCCA 709 591 511 Antisense
CATCATCAACATTCGTGACGTCATC 75 213 554 Antisense
ACGTGGCGTTCACTATAGTCCGACT 124 95 591 Antisense
GATGAGGATGAGCAGCCGGGCAGGA 504 411 661 Antisense
ATGAATGCTCTGCGAGTTCAACGCC 618 43 829 Antisense
Sequence Source Affymetrix Proprietary Database