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[177944_at]

Description Y7A5A.8 /REP_DB=WormBase Gene ID /WP=CE21333 /TR=Q9XVY6 /GB=CAA22468.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.3
(3)
A 		1.9
(-3)
A 		3.1
(-2.6)
A 		3.8
(-2.4)
A 		18
B 1.4
(-3)
A 		1.7
(-2.3)
A 		2.1
(-1.3)
A 		3.8
(3)
A 		2
C 2.1
(-3)
A 		2.3
(-2.9)
A 		2.4
(-2.8)
A 		11.8
(3)
A 		10
avr 7.9
(3) 		2
(-3) 		2.5
(-2.5) 		6.5
(1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		1.7
(-2.8)
A 		1.8
(-2.7)
A 		15.9
(3)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		15
B 2.2
(-2.5)
A 		1.3
(-2.9)
A 		1.9
(-2.6)
A 		15.8
(3)
A 		1.3
(-2.9)
A 		1
(-3)
A 		15
C 7.7
(3)
A 		3
(-1.5)
A 		2.6
(-1.9)
A 		2.1
(-2.4)
A 		1.5
(-3)
A 		2.2
(-2.3)
A 		6
avr 4
(-1.4) 		2
(-2.6) 		2.1
(-2.6) 		11.3
(3) 		1.4
(-3) 		1.4
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.4
(3)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		0.5
(-2.9)
A 		7
B 0.5
(-1.5)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0
C 0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		2
(3)
A 		1
avr 2.9
(3) 		0.5
(-3) 		0.7
(-2.5) 		1.1
(-1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.8)
A 		0.6
(-2.5)
A 		0.4
(-2.8)
A 		4
(3)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		4
B 0.8
(-2.4)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		4.2
(3)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		4
C 2.9
(3)
A 		0.9
(-1.8)
A 		0.7
(-2.3)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		0.7
(-2.3)
A 		3
avr 1.4
(-0.8) 		0.6
(-2.8) 		0.5
(-3) 		2.9
(3) 		0.5
(-3) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17418
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.8 NCBI
Target Description Y7A5A.8 /REP_DB=WormBase Gene ID /WP=CE21333 /TR=Q9XVY6 /GB=CAA22468.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078200 NCBI Caenorhabditis elegans Y7A5A.8 (Y7A5A.8) mRNA, complete cds. 11/11 None
Y7A5A.8 ENSEMBL cdna:known chromosome:CEL140:X:15821339:15825055:1 gene:Y7A5A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028084 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028089 8/11 Cross Hyb Matching Probes None
SNAP00000028085 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028091 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15821338-15825055(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.8
Entrez Gene 189387 Entrez gene
SwissProt Q9XVY6 EMBL-EBI
WormBase CE21333 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22468 Hypothetical protein Y7A5A.8 [Caenorhabditis elegans] ref|NP_510601.1| Y7A5A.8 [Caenorhabditis elegans] 1.0E-87
Sequence
Target Sequence 
>C. ELEGANS:177944_AT
gcagaagcacgagcaggatgccagaaaaagatgagctagagaaaagccggaaaaatctga
agcaaggaagcagcactatctggtggatggtcaaatgttttttttcaaatttatcaccct
gggcaatggtaattaatggatctgtctcgagtttacttgaaatgtcagtaccgcaaattt
tctcaaaccaacaacatctacttcaagacaaaccaaaaagagcaatggcacaaggagaac
atggaaacgacgcttcaaaagagcaagaagctaaagctcaaaaagtggaaatcaagaagc
ttacagcaaacggaaaaaacaaggacaaggaaaaaatgaactcaaatgtgaaaggagaac
cttggaaagtacatgtggtcggtggaacatggatagagaaggcgaataaagcggaatctg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGAAGCACGAGCAGGATGCCAGA 24 313 32 Antisense
GAAGCAAGGAAGCAGCACTATCTGG 576 339 90 Antisense
GCAGCACTATCTGGTGGATGGTCAA 678 311 101 Antisense
GTGGATGGTCAAATGTTTTTTTTCA 477 489 114 Antisense
TTTTCAAATTTATCACCCTGGGCAA 683 675 133 Antisense
AATGGATCTGTCTCGAGTTTACTTG 36 163 166 Antisense
GTCAGTACCGCAAATTTTCTCAAAC 199 467 195 Antisense
AACATGGAAACGACGCTTCAAAAGA 76 135 269 Antisense
GGAAAGTACATGTGGTCGGTGGAAC 508 525 395 Antisense
GTGGTCGGTGGAACATGGATAGAGA 42 489 406 Antisense
GAAGGCGAATAAAGCGGAATCTGGA 477 333 429 Antisense
Sequence Source Affymetrix Proprietary Database