[Home] | [Total List]

[177943_at]

Description B0457.4 /REP_DB=WormBase Gene ID /WP=CE02948 /TR=Q17502 /GB=CAA91088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 42.9
(-0.1)
A 		5.8
(-3)
A 		5.9
(-3)
A 		83.5
(3)
A 		78
B 8.7
(3)
A 		5.5
(-3)
A 		7.5
(0.8)
A 		6.9
(-0.4)
A 		3
C 12.4
(-3)
A 		38.3
(0.5)
A 		40.3
(0.7)
A 		57.2
(3)
A 		45
avr 21.3
(-2.1) 		16.5
(-3) 		17.9
(-2.7) 		49.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 30.4
(-0)
A 		10
(-3)
A 		37.1
(0.9)
A 		31
(0.1)
A 		12.6
(-2.6)
A 		51.3
(3)
A 		41
B 13
(-0.7)
A 		6.1
(-2.6)
A 		18.6
(0.8)
A 		4.5
(-3)
A 		26.7
(3)
A 		26.5
(2.9)
A 		22
C 9.2
(-2.3)
A 		24.4
(0.6)
A 		12.7
(-1.6)
A 		20.7
(-0.1)
A 		5.3
(-3)
A 		36.7
(3)
A 		31
avr 17.5
(-2) 		13.5
(-3) 		22.8
(-0.7) 		18.7
(-1.7) 		14.9
(-2.7) 		38.2
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.6
(3)
A 		1.3
(-3)
A 		1.5
(-2.9)
A 		12.2
(1.6)
A 		14
B 2.8
(3)
A 		1.4
(-3)
A 		1.7
(-1.7)
A 		1.5
(-2.6)
A 		1
C 4.1
(-3)
A 		11
(1.1)
A 		14.1
(3)
A 		9.6
(0.3)
A 		10
avr 7.5
(2.4) 		4.6
(-3) 		5.8
(-0.8) 		7.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.6
(-1.6)
A 		3.5
(-3)
A 		8.1
(0.1)
A 		7.9
(-0.1)
A 		3.8
(-2.8)
A 		12.5
(3)
A 		9
B 4.5
(-1)
A 		2
(-2.5)
A 		4.5
(-1)
A 		1.2
(-3)
A 		10.9
(3)
A 		9.9
(2.4)
A 		10
C 3.4
(-2)
A 		7.4
(0.2)
A 		3.2
(-2.2)
A 		4.2
(-1.6)
A 		1.7
(-3)
A 		12.3
(3)
A 		11
avr 4.5
(-2.8) 		4.3
(-3) 		5.3
(-2.2) 		4.4
(-2.9) 		5.5
(-2) 		11.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3624
Sequence Type Exemplar sequence
Representative Public ID B0457.4 NCBI
Target Description B0457.4 /REP_DB=WormBase Gene ID /WP=CE02948 /TR=Q17502 /GB=CAA91088.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063495 NCBI Caenorhabditis elegans B0457.4 (B0457.4) mRNA, complete cds. 11/11 None
SNAP00000022753 ENSEMBL cdna:SNAP chromosome:CEL140:II:8908919:8911940:-1 11/11 None
GENEFINDER00000022759 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8910926:8911940:-1 11/11 None
B0457.4 ENSEMBL cdna:known chromosome:CEL140:II:8910926:8911940:-1 gene:B0457.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8910922-8911937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0457.4
Entrez Gene 181996 Entrez gene
SwissProt Q17502 EMBL-EBI
WormBase CE02948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91088 Hypothetical protein B0457.4 [Caenorhabditis elegans] ref|NP_495896.1| B0457.4 [Caenorhabditis elegans] 1.0E-144
blast T18757 hypothetical protein B0457.3 - Caenorhabditis elegans 2.0E-83
blast T18757 hypothetical protein B0457.3 - Caenorhabditis elegans 6.0E-83
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:177943_AT
ctttccgatggatcaacgctgggctgaatctactgttgttacgaatgaaacacactgttt
gtgcgagatcttgacttgcagaaattgcaataaatcccacaagaggtctcgaatcgaaca
tgtggaagtgtcccaatgccgatttagttggtttaaagtttcgatgaagcagccaggaca
tgcaaagaagatgttgagtgagacttctaagctcggagtacaagttgaagacatattgca
tgctttgttaccatcaagcaatccaaattgctggcttcatttctacacgtttaaagcaaa
atcaatcgaagatgaagagaaactgaagaccgctgttgagaccaatttcgttagagggtt
caatgcggagtcattgctgggaaatgctgacaagtcattcttcttccatgacattgatat
gagaagtgcgttgattctctgcacaattgccactttcttaaaacattggaaaatcgagtc
tcctctgccaccgatggatttgcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCCGATGGATCAACGCTGGGCT 68 19 168 Antisense
ACGCTGGGCTGAATCTACTGTTGTT 254 91 183 Antisense
ACACTGTTTGTGCGAGATCTTGACT 342 111 219 Antisense
CATGTGGAAGTGTCCCAATGCCGAT 146 209 286 Antisense
GTGAGACTTCTAAGCTCGGAGTACA 536 481 365 Antisense
CAAATTGCTGGCTTCATTTCTACAC 614 193 431 Antisense
GACCGCTGTTGAGACCAATTTCGTT 315 381 495 Antisense
ATGCTGACAAGTCATTCTTCTTCCA 173 43 551 Antisense
GTTGATTCTCTGCACAATTGCCACT 484 437 597 Antisense
TTGGAAAATCGAGTCTCCTCTGCCA 454 709 633 Antisense
CTCTGCCACCGATGGATTTGCTTCG 559 231 650 Antisense
Sequence Source Affymetrix Proprietary Database