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[177942_at]

Description F33A8.7 /REP_DB=WormBase Gene ID /WP=CE23701 /TR=Q9U3G9 /GB=CAB54242.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 921
1 2 3 4 range
A 29.1
(-3)
A 		949.6
(3)
P 		700.6
(1.4)
P 		49.2
(-2.9)
A 		921
B 41.8
(-3)
A 		793.7
(2.4)
P 		879
(3)
P 		41.3
(-3)
M 		838
C 70.7
(-3)
P 		825.4
(3)
P 		811.7
(2.9)
P 		88.8
(-2.9)
P 		755
avr 47.2
(-3) 		856.2
(3) 		797.1
(2.6) 		59.8
(-2.9) 		809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1249
1 2 3 4 5 6 range
A 95.2
(-3)
P 		1068.4
(2.4)
P 		512
(-0.7)
P 		1010
(2.1)
P 		1172.6
(3)
P 		508
(-0.7)
P 		1077
B 111.3
(-3)
P 		1073.6
(1.7)
P 		547.5
(-0.9)
P 		850.9
(0.6)
P 		1343.7
(3)
P 		498.9
(-1.1)
P 		1232
C 100.4
(-3)
P 		1122.5
(3)
P 		556.9
(-0.3)
P 		1130
(3)
P 		1098.7
(2.8)
P 		483.9
(-0.8)
P 		1030
avr 102.3
(-3) 		1088.2
(2.4) 		538.8
(-0.6) 		997
(1.9) 		1205
(3) 		496.9
(-0.9) 		1103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 10.6
(-2.9)
A 		206.1
(3)
P 		183.2
(2.3)
P 		7.2
(-3)
A 		199
B 13.3
(-2.9)
A 		196
(2.8)
P 		203.7
(3)
P 		8.8
(-3)
M 		195
C 23.4
(-2.8)
P 		237.3
(2)
P 		282.9
(3)
P 		15
(-3)
P 		268
avr 15.8
(-2.8) 		213.1
(2.7) 		223.3
(3) 		10.3
(-3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 17.6
(-3)
P 		380
(3)
P 		111.5
(-1.4)
P 		256.2
(1)
P 		353.8
(2.6)
P 		123.7
(-1.2)
P 		362
B 38.7
(-3)
P 		357.4
(0.8)
P 		133
(-1.9)
P 		225.4
(-0.8)
P 		545.9
(3)
P 		186.1
(-1.3)
P 		507
C 37.2
(-3)
P 		342.5
(2.8)
P 		141.7
(-1)
P 		227.3
(0.6)
P 		355.5
(3)
P 		162
(-0.6)
P 		318
avr 31.2
(-3) 		360
(2.1) 		128.7
(-1.5) 		236.3
(0.2) 		418.4
(3) 		157.3
(-1) 		387
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2976
Sequence Type Exemplar sequence
Representative Public ID F33A8.7 NCBI
Target Description F33A8.7 /REP_DB=WormBase Gene ID /WP=CE23701 /TR=Q9U3G9 /GB=CAB54242.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063963 NCBI Caenorhabditis elegans F33A8.7 (F33A8.7) mRNA, complete cds. 11/11 None
SNAP00000001849 ENSEMBL cdna:SNAP chromosome:CEL140:II:11023808:11025469:-1 11/11 None
GENEFINDER00000001882 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11023808:11025469:-1 11/11 None
F33A8.7 ENSEMBL cdna:known chromosome:CEL140:II:11023808:11025484:-1 gene:F33A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11023804-11025466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33A8.7
Entrez Gene 174688 Entrez gene
SwissProt Q9U3G9 EMBL-EBI
WormBase CE23701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54242 Hypothetical protein F33A8.7 [Caenorhabditis elegans] ref|NP_496364.1| F33A8.7 [Caenorhabditis elegans] 2.0E-83
blast CAE59585 Hypothetical protein CBG02985 [Caenorhabditis briggsae] 3.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496364.1 1 4-23
F33A8.7 1 4-23
SNAP00000001849 1 4-23
GENEFINDER00000001882 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:177942_AT
accacaactacgtgcttgttcttcttgttcttttggctacggttgttctttcgaatcagg
cgcaggacactgacgtacaacaccgaaaggacttgaaccaaatcaactactacaattggc
ttcttcaccgtcatcgtaccgaacgacagaagatcgagaaagttaataatgatatcagag
atgctcgtcttataaaactgcagcagattcttgatagcccagctccgcaaaatgtcaccc
taatcgcaactcaatctgatttctcgagaatcagtcgtctagtgcatccagtgagcaaca
agccagtcacagattcagttgatgaactcaacaaggttcttggtgtacacagaagacaag
cgagaaagggagcacaaagcgatgcagctgcacagaagccagaagatctcgtcgaattcc
agatttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACAACTACGTGCTTGTTCTTCT 453 83 26 Antisense
TTGGCTACGGTTGTTCTTTCGAATC 400 691 58 Antisense
GCAGGACACTGACGTACAACACCGA 328 309 87 Antisense
TACTACAATTGGCTTCTTCACCGTC 109 645 133 Antisense
TTCACCGTCATCGTACCGAACGACA 696 681 149 Antisense
AGCAGATTCTTGATAGCCCAGCTCC 69 77 227 Antisense
CAAAATGTCACCCTAATCGCAACTC 59 191 253 Antisense
ATCGCAACTCAATCTGATTTCTCGA 343 35 268 Antisense
CAGTCGTCTAGTGCATCCAGTGAGC 482 207 297 Antisense
GCAACAAGCCAGTCACAGATTCAGT 58 319 320 Antisense
GATCTCGTCGAATTCCAGATTTCCG 341 419 430 Antisense
Sequence Source Affymetrix Proprietary Database