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[177940_at]

Description E02H4.4 /REP_DB=WormBase Gene ID /WP=CE05550 /TR=Q19040 /GB=CAA91977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 20.5
(-3)
A 		33.4
(-0.7)
A 		38
(0.1)
A 		53.9
(3)
A 		33
B 26.5
(-1.2)
A 		15.6
(-3)
A 		34.5
(0.1)
A 		52.6
(3)
A 		37
C 19
(-3)
A 		64.4
(3)
A 		21.1
(-2.7)
A 		63.6
(2.9)
A 		45
avr 22
(-3) 		37.8
(-0.3) 		31.2
(-1.4) 		56.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.1
(-2.3)
A 		7.7
(-2.8)
A 		35.7
(1.2)
A 		7.3
(-2.8)
A 		6.2
(-3)
A 		48.1
(3)
A 		42
B 32
(0.6)
A 		12.3
(-2)
A 		49.3
(3)
A 		6.2
(-2.9)
A 		5.3
(-3)
A 		6.3
(-2.9)
A 		44
C 36
(0.2)
A 		27.9
(-1.3)
A 		22.6
(-2.2)
A 		52.3
(3)
A 		43.5
(1.5)
A 		17.9
(-3)
A 		34
avr 26.4
(0.1) 		16
(-3) 		35.9
(3) 		21.9
(-1.2) 		18.3
(-2.3) 		24.1
(-0.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.5
(-2.3)
A 		7.2
(-3)
A 		9.9
(3)
A 		7.9
(-1.4)
A 		3
B 8.4
(0.7)
A 		3.9
(-3)
A 		8
(0.4)
A 		11.2
(3)
A 		7
C 6.3
(-3)
A 		18.5
(3)
A 		7.4
(-2.5)
A 		10.7
(-0.8)
A 		12
avr 7.4
(-3) 		9.9
(3) 		8.4
(-0.6) 		9.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2
(-2.9)
A 		2.7
(-2.5)
A 		7.8
(0.6)
A 		1.9
(-3)
A 		1.9
(-3)
A 		11.7
(3)
A 		10
B 11.1
(2.5)
A 		4.1
(-1.6)
A 		12
(3)
A 		1.6
(-3)
A 		2.2
(-2.7)
A 		2.3
(-2.6)
A 		10
C 13.3
(2.4)
A 		8.5
(-1)
A 		5.7
(-3)
A 		10.5
(0.4)
A 		14.1
(3)
A 		6
(-2.8)
A 		8
avr 8.8
(3) 		5.1
(-2.4) 		8.5
(2.6) 		4.7
(-3) 		6.1
(-1) 		6.7
(-0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17393
Sequence Type Exemplar sequence
Representative Public ID E02H4.4 NCBI
Target Description E02H4.4 /REP_DB=WormBase Gene ID /WP=CE05550 /TR=Q19040 /GB=CAA91977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077978 NCBI Caenorhabditis elegans E02H4.4 (E02H4.4) mRNA, complete cds. 11/11 None
E02H4.4 ENSEMBL cdna:known chromosome:CEL140:X:14256201:14263175:1 gene:E02H4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016451 11/11 Negative Strand Matching Probes None
GENEFINDER00000016460 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14256200-14263175(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H4.4
Entrez Gene 183995 Entrez gene
SwissProt Q19040 EMBL-EBI
WormBase CE05550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91977 Hypothetical protein E02H4.4 [Caenorhabditis elegans] ref|NP_510379.1| E02H4.4 [Caenorhabditis elegans] 0.0
blast CAE65585 Hypothetical protein CBG10596 [Caenorhabditis briggsae] 3.0E-93
blast CAB04581 Hypothetical protein K06G5.1a [Caenorhabditis elegans] ref|NP_001024765.1| K06G5.1a [Caenorhabditis elegans] 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:177940_AT
gatatattttcttcgtggtccttctgttccaggaggtggagaaagtgtagttcccggtgg
ttgtggttcttccgagggtggaggtggagaaagtgtagttcccggtggtcgcggttcttt
agagggtggaggtggagaaagtgtagttcctggtggtcgcggctctgcagagggtggagg
tggagcaagtgtagttcccgatggtcgtggctcttccgacggtggaggtggagaaagtgt
tgttcccggtggtcggggctcttctgatggtggaggtggagaaagtgtagttccccatgg
tcgcaaacgagtagtccttcgtctcctcgtgtgtctatcttgtaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATATTTTCTTCGTGGTCCTTCT 155 427 2139 Antisense
TGGTCCTTCTGTTCCAGGAGGTGGA 570 545 2154 Antisense
GTGGTTCTTCCGAGGGTGGAGGTGG 508 487 2201 Antisense
TGGTCGCGGTTCTTTAGAGGGTGGA 243 495 2244 Antisense
TCGCGGCTCTGCAGAGGGTGGAGGT 137 599 2295 Antisense
AGCAAGTGTAGTTCCCGATGGTCGT 659 75 2322 Antisense
TGGCTCTTCCGACGGTGGAGGTGGA 172 535 2346 Antisense
TCGGGGCTCTTCTGATGGTGGAGGT 458 583 2391 Antisense
GTTCCCCATGGTCGCAAACGAGTAG 346 439 2428 Antisense
CGCAAACGAGTAGTCCTTCGTCTCC 710 251 2440 Antisense
CTCCTCGTGTGTCTATCTTGTAACT 502 235 2461 Antisense
Sequence Source Affymetrix Proprietary Database