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[177939_at]

Description T05F1.5 /REP_DB=WormBase Gene ID /WP=CE23949 /TR=O18034 /GB=CAB04688.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(-3)
A 		8.5
(1.6)
A 		10.4
(3)
A 		6.1
(-0.2)
A 		8
B 2.2
(-3)
A 		6.7
(2.4)
A 		3.9
(-1)
A 		7.2
(3)
A 		5
C 1.6
(-3)
A 		2.8
(3)
A 		2.6
(2)
A 		2.3
(0.5)
A 		1
avr 2
(-3) 		6
(3) 		5.6
(2.4) 		5.2
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 3
(-3)
A 		3.3
(-3)
A 		7
(-2.9)
A 		15.9
(-2.6)
A 		189.5
(2.2)
P 		219.9
(3)
P 		217
B 3
(-3)
A 		3.5
(-3)
A 		2
(-3)
A 		36.6
(-2)
A 		161.1
(1.8)
P 		201.2
(3)
P 		199
C 1.9
(-3)
A 		2.4
(-3)
A 		3
(-3)
A 		35.5
(-1.9)
A 		139.1
(1.4)
P 		187.4
(3)
P 		186
avr 2.6
(-3) 		3.1
(-3) 		4
(-3) 		29.3
(-2.2) 		163.2
(1.8) 		202.8
(3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(-3)
A 		1.8
(0.2)
A 		2.7
(3)
A 		0.9
(-2.7)
A 		2
B 0.7
(-3)
A 		1.7
(3)
A 		0.9
(-1.8)
A 		1.5
(1.8)
A 		1
C 0.5
(-1.8)
A 		0.8
(1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		1
avr 0.7
(-3) 		1.4
(2.3) 		1.5
(3) 		0.9
(-1.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.9)
A 		1.5
(-2.9)
A 		4
(-2.6)
A 		57.2
(3)
P 		53.5
(2.6)
P 		57
B 1
(-3)
A 		1.2
(-2.9)
A 		0.5
(-3)
A 		9.7
(-2.3)
A 		65.5
(2.2)
P 		75
(3)
P 		75
C 0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-3)
A 		7.1
(-2.4)
A 		45
(1.3)
P 		62.7
(3)
P 		62
avr 0.8
(-3) 		1
(-3) 		0.9
(-3) 		6.9
(-2.4) 		55.9
(2.3) 		63.7
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1892
Sequence Type Exemplar sequence
Representative Public ID T05F1.5 NCBI
Target Description T05F1.5 /REP_DB=WormBase Gene ID /WP=CE23949 /TR=O18034 /GB=CAB04688.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060158 NCBI Caenorhabditis elegans T05F1.5 (T05F1.5) mRNA, complete cds. 11/11 None
SNAP00000020944 ENSEMBL cdna:SNAP chromosome:CEL140:I:9641359:9642968:-1 11/11 None
GENEFINDER00000020961 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9641359:9642968:-1 11/11 None
T05F1.5 ENSEMBL cdna:known chromosome:CEL140:I:9641359:9644003:-1 gene:T05F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9641289-9642899(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.5
Entrez Gene 172808 Entrez gene
SwissProt O18034 EMBL-EBI
WormBase CE23949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04688 Hypothetical protein T05F1.5 [Caenorhabditis elegans] ref|NP_492559.1| T05F1.5 [Caenorhabditis elegans] 0.0
blast CAA91088 Hypothetical protein B0457.4 [Caenorhabditis elegans] ref|NP_495896.1| B0457.4 [Caenorhabditis elegans] 2.0E-27
blast T18757 hypothetical protein B0457.3 - Caenorhabditis elegans 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:177939_AT
agagtttggactggatccactccctggagcccatttcagctggattgtagctgtttgacg
gtaacatgtgatggttttagttcgaagttcaagagacaacgtgttggagcgtcttcagga
cggttttcatggttcaagataaacacatcgaagccaactgacgcagagatggtgtacagc
aaagccagacgcaatggattgtctattcgtgaattggagcacgacgccattccatccaag
ctgagcgagtttgcatttcacttctacactttcgccgtatccgacgaggatgtttcaaag
gtcaatagattgattgatgaagactttgttggagctttcaacgcggatactctactcaag
aatccagcacagtcgtttttcttccacaacatcgaccaaaaggacgtcattgcattgtgt
gctcttgcaacacactacaaccttcacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTTTGGACTGGATCCACTCCCT 388 67 505 Antisense
CTGGAGCCCATTTCAGCTGGATTGT 299 241 528 Antisense
GTCTTCAGGACGGTTTTCATGGTTC 328 469 615 Antisense
GTGAATTGGAGCACGACGCCATTCC 528 481 713 Antisense
CGCCATTCCATCCAAGCTGAGCGAG 378 257 729 Antisense
TTGCATTTCACTTCTACACTTTCGC 458 703 755 Antisense
CTTTCAACGCGGATACTCTACTCAA 265 223 839 Antisense
GAATCCAGCACAGTCGTTTTTCTTC 132 331 864 Antisense
TCGTTTTTCTTCCACAACATCGACC 613 603 877 Antisense
GGACGTCATTGCATTGTGTGCTCTT 239 525 906 Antisense
TTGCAACACACTACAACCTTCACAG 651 703 929 Antisense
Sequence Source Affymetrix Proprietary Database