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[177938_at] 7TM chemoreceptor, sri family

Description F13A7.8 /REP_DB=WormBase Gene ID /WP=CE15813 /TR=O45356 /GB=CAB07578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 21      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 35.4
(-0.3)
A 		36.7
(-0.2)
A 		4.2
(-3)
A 		74
(3)
A 		70
B 34.5
(1.7)
A 		37.3
(3)
A 		31
(0)
A 		24.6
(-3)
A 		13
C 50.4
(0.7)
A 		19
(-3)
A 		24.8
(-2.3)
A 		69.7
(3)
A 		51
avr 40.1
(0.3) 		31
(-1.2) 		20
(-3) 		56.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 51.5
(3)
A 		32.2
(0.4)
A 		38.8
(1.3)
A 		34.7
(0.7)
A 		7.7
(-3)
A 		19.1
(-1.4)
A 		44
B 53.1
(3)
A 		39.7
(1.3)
A 		6.1
(-3)
A 		24.1
(-0.7)
A 		34.6
(0.6)
A 		24.8
(-0.6)
A 		47
C 25.1
(-0.2)
A 		39.3
(2.7)
A 		40.6
(3)
A 		11.4
(-3)
A 		23.5
(-0.5)
A 		28.1
(0.4)
A 		29
avr 43.2
(3) 		37.1
(1.3) 		28.5
(-1.1) 		23.4
(-2.6) 		21.9
(-3) 		24
(-2.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.9
(3)
A 		8
(0.5)
A 		1.1
(-3)
A 		10.8
(1.9)
A 		12
B 11
(3)
A 		9.2
(1.1)
A 		7.2
(-0.9)
A 		5.2
(-3)
A 		6
C 16.7
(3)
A 		5.4
(-3)
A 		8.7
(-1.2)
A 		11.8
(0.4)
A 		11
avr 13.5
(3) 		7.5
(-1.6) 		5.7
(-3) 		9.3
(-0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(1.7)
A 		11.4
(3)
A 		8.4
(1)
A 		8.8
(1.3)
A 		2.3
(-3)
A 		4.6
(-1.5)
A 		9
B 18.5
(3)
A 		13.2
(1.1)
A 		1.5
(-3)
A 		6.4
(-1.3)
A 		14.1
(1.4)
A 		9.3
(-0.2)
A 		17
C 9.3
(1.3)
A 		12
(3)
A 		10.3
(1.9)
A 		2.3
(-3)
A 		7.6
(0.3)
A 		9.4
(1.4)
A 		10
avr 12.4
(3) 		12.2
(2.8) 		6.7
(-2.2) 		5.8
(-3) 		8
(-1) 		7.8
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14233
Sequence Type Exemplar sequence
Representative Public ID F13A7.8 NCBI
Target Description F13A7.8 /REP_DB=WormBase Gene ID /WP=CE15813 /TR=O45356 /GB=CAB07578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074739 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-65) (sri-65) mRNA, complete cds. 11/11 None
SNAP00000025225 ENSEMBL cdna:SNAP chromosome:CEL140:V:16389245:16390713:-1 9/11 None
GENEFINDER00000025239 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16388356:16390831:-1 11/11 None
F13A7.8 ENSEMBL cdna:known chromosome:CEL140:V:16389245:16390951:-1 gene:F13A7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16389334-16390951(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-65
Ensembl F13A7.8
Entrez Gene 184404 Entrez gene
SwissProt O45356 EMBL-EBI
WormBase CE33614 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07578 Hypothetical protein F13A7.8 [Caenorhabditis elegans] ref|NP_507140.2| Serpentine Receptor, class I family member (sri-65) [Caenorhabditis elegans] 1.0E-167
blast CAB07578 Hypothetical protein F13A7.8 [Caenorhabditis elegans] ref|NP_507140.2| Serpentine Receptor, class I family member (sri-65) [Caenorhabditis elegans] 1.0E-142
blast CAB07578 Hypothetical protein F13A7.8 [Caenorhabditis elegans] ref|NP_507140.2| Serpentine Receptor, class I family member (sri-65) [Caenorhabditis elegans] 3.0E-63
blast T33560 hypothetical protein F34D6.5 - Caenorhabditis elegans 2.0E-58
blast CAE63429 Hypothetical protein CBG07875 [Caenorhabditis briggsae] 7.0E-54
blast T20811 hypothetical protein F13A7.6 - Caenorhabditis elegans 4.0E-53
blast T32076 hypothetical protein F22E5.15 - Caenorhabditis elegans 9.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-57
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.2E-19
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.2E-46
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.4E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507140.2 7 11-33,46-65,93-115,135-157,193-215,243-265,278-300
F13A7.8 7 11-33,46-65,93-115,135-157,193-215,243-265,278-300
SNAP00000025225 3 55-77,105-127,140-162
GENEFINDER00000025239 9 21-43,53-75,95-117,153-175,203-225,235-257,278-297,312-330,337-359
Sequence
Target Sequence 
>C. ELEGANS:177938_AT
aagcatcaatccttggcgactattctaatgcagcatatttttccaaaatggtatgactta
tccatttacataatctgtgcagttgctccaattattggtggaatttggttttttctatta
atgccaactaaaaaagaacagtgggagtatataattgaggcatatcccgactacctcgac
gatttccaatccttggcgcattttacgatattccgaaaatcgatcggcatgattttcttc
tttctcttcttactcggaggtatatctggattgctctttctactcaccttgtatctaatt
gatattttccgaatgatgagtattttgaagactaaaatatcaaaaagtaactataaaaag
catcatgatggtgttcgaagtattcaagtttccattgcaacttccgccgtagcagttata
tgcccctccttcatcgtcgtgattgtcctttttgatgttggaaatgctcaattgctcact
gaattggctgttgctgtcgtgggaactcatggatcaattaatgttatttgtatgcttgtg
ttctttccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATCAATCCTTGGCGACTATTC 394 151 367 Antisense
TTGAGGCATATCCCGACTACCTCGA 514 699 521 Antisense
TCGACGATTTCCAATCCTTGGCGCA 658 601 542 Antisense
GATCGGCATGATTTTCTTCTTTCTC 135 419 588 Antisense
TTCTTTCTCTTCTTACTCGGAGGTA 618 687 604 Antisense
TATATCTGGATTGCTCTTTCTACTC 475 661 627 Antisense
TCAAGTTTCCATTGCAACTTCCGCC 75 633 750 Antisense
TTCCGCCGTAGCAGTTATATGCCCC 676 685 768 Antisense
TCATCGTCGTGATTGTCCTTTTTGA 476 621 797 Antisense
TGCTCACTGAATTGGCTGTTGCTGT 46 579 839 Antisense
TTTGTATGCTTGTGTTCTTTCCACC 385 667 893 Antisense
Sequence Source Affymetrix Proprietary Database