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[177937_s_at]

Description F36A2.1 /REP_DB=WormBase Gene ID /WP=CE09941 /TR=Q9XVN9 /GB=CAB03066.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 85      6grp_total > 48      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 916.2
(3)
P 		753.3
(0.7)
P 		486.9
(-3)
P 		682.1
(-0.3)
P 		429
B 873.1
(3)
P 		644.7
(-1.4)
P 		562.6
(-3)
P 		659
(-1.1)
P 		311
C 912.9
(3)
P 		583.1
(-2.9)
P 		580.3
(-3)
P 		749.2
(0)
P 		333
avr 900.7
(3) 		660.4
(-1) 		543.3
(-3) 		696.8
(-0.4) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 761.9
(-0.6)
P 		836.7
(0.2)
P 		522.9
(-3)
P 		725.1
(-1)
P 		854.5
(0.3)
P 		1120.6
(3)
P 		598
B 823.6
(1.6)
P 		723.1
(-0)
P 		538.3
(-3)
P 		715.6
(-0.1)
P 		605.6
(-1.9)
P 		908.4
(3)
P 		370
C 862.5
(2)
P 		829.2
(1.3)
P 		784.4
(0.4)
P 		615.6
(-3)
P 		706.9
(-1.2)
P 		913.1
(3)
P 		298
avr 816
(0.3) 		796.3
(-0) 		615.2
(-3) 		685.4
(-1.8) 		722.3
(-1.2) 		980.7
(3) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 333.6
(3)
P 		163.5
(-1.4)
P 		127.3
(-2.3)
P 		99.8
(-3)
P 		234
B 278.4
(3)
P 		159.2
(-1.8)
P 		130.4
(-3)
P 		140.4
(-2.6)
P 		148
C 302.2
(3)
P 		167.6
(-1.6)
P 		202.3
(-0.4)
P 		126.3
(-3)
P 		176
avr 304.7
(3) 		163.4
(-1.6) 		153.3
(-2) 		122.2
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 140.4
(-2.1)
P 		297.6
(3)
P 		113.9
(-3)
P 		183.9
(-0.7)
P 		257.9
(1.7)
P 		272.8
(2.2)
P 		184
B 286.6
(1.5)
P 		240.7
(0.2)
P 		130.7
(-3)
P 		189.5
(-1.3)
P 		246.1
(0.3)
P 		338.7
(3)
P 		208
C 319.7
(3)
P 		253
(1)
P 		199.6
(-0.7)
P 		123.8
(-3)
P 		228.8
(0.2)
P 		305.7
(2.6)
P 		196
avr 248.9
(0.8) 		263.8
(1.4) 		148.1
(-3) 		165.7
(-2.3) 		244.3
(0.7) 		305.7
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177937_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1860
Sequence Type Exemplar sequence
Representative Public ID F36A2.1 NCBI
Target Description F36A2.1 /REP_DB=WormBase Gene ID /WP=CE09941 /TR=Q9XVN9 /GB=CAB03066.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059979(11), NM_182083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059979 NCBI Caenorhabditis elegans F36A2.1a (F36A2.1) mRNA, complete cds. 11/11 None
NM_182083 NCBI Caenorhabditis elegans F36A2.1b (F36A2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004944 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8813199:8816100:-1 10/11 None
F36A2.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:8812927:8816411:-1 gene:F36A2.1 11/11 None
F36A2.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:8813257:8816173:-1 gene:F36A2.1 11/11 None
F36A2.1b ENSEMBL cdna:known chromosome:CEL140:I:8813257:8816164:-1 gene:F36A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004920 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8813187-8816031(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36A2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03066 Hypothetical protein F36A2.1a [Caenorhabditis elegans] ref|NP_492380.1| F36A2.1a [Caenorhabditis elegans] 0.0
blast CAD56583 Hypothetical protein F36A2.1b [Caenorhabditis elegans] ref|NP_871883.1| F36A2.1b [Caenorhabditis elegans] 0.0
blast CAE66976 Hypothetical protein CBG12372 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006903 EMBL-EBI Protein of unknown function DUF618 3.1E-38
Sequence
Target Sequence 
>C. ELEGANS:177937_S_AT
gccaattctgttactccacaatctgtagcagtagcacagcaaccacctatcacaggatac
caagctcagtacgagcaaatacgggatccaagaatattgcaacaagctgcacctcagcaa
ggatatcaagcaacatttgaagttcaaaagccacaacttgtgtcaccacaaatacaaaat
aatggatatcaagctagattcgagcaatcacagctctcgccgtcaattcctcaacatcaa
ccagtgggtcaataccatcaacagaaaaatacatactgtcagccacctccacaacatcat
caatatcaacagcaatctcaacaatcacacggatattcttcagattatcattctggagac
cgcagagacgatcgtggaagagataattatcaaaacagtcggtatgatgatcgtagagga
tcaagtgctccgtacaataatcaacggggtgacagatggcgaggtagtggctctcatcat
aacgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAATTCTGTTACTCCACAATCTG 26 279 1390 Antisense
TGTAGCAGTAGCACAGCAACCACCT 608 559 1413 Antisense
GCAACCACCTATCACAGGATACCAA 196 319 1428 Antisense
ATTGCAACAAGCTGCACCTCAGCAA 709 5 1485 Antisense
AAAGCCACAACTTGTGTCACCACAA 420 125 1536 Antisense
CGTCAATTCCTCAACATCAACCAGT 32 247 1610 Antisense
AAAATACATACTGTCAGCCACCTCC 636 133 1655 Antisense
CACCTCCACAACATCATCAATATCA 592 201 1673 Antisense
GGAGACCGCAGAGACGATCGTGGAA 302 519 1744 Antisense
GTAGAGGATCAAGTGCTCCGTACAA 689 455 1802 Antisense
GGTAGTGGCTCTCATCATAACGATA 176 505 1852 Antisense
Sequence Source Affymetrix Proprietary Database