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[177936_s_at]

Description Y7A5A.1 /REP_DB=WormBase Gene ID /WP=CE21326 /TR=Q9XVZ2 /GB=CAA22461.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 51      6grp_highest_nonorm > 45      6grp_total > 51      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1841
1 2 3 4 range
A 1359.5
(1.4)
P 		1606.7
(2.2)
P 		1845.5
(3)
P 		4.7
(-3)
A 		1841
B 1630.5
(2.9)
P 		1583.2
(2.7)
P 		1668.6
(3)
P 		5.2
(-3)
A 		1663
C 1188.6
(1.1)
P 		1513.8
(2.3)
P 		1723.6
(3)
P 		29.3
(-3)
A 		1694
avr 1392.9
(1.8) 		1567.9
(2.4) 		1745.9
(3) 		13.1
(-3) 		1733

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1610
1 2 3 4 5 6 range
A 2361.9
(1.7)
P 		2204.2
(0.9)
P 		2573.6
(2.8)
P 		2621.8
(3)
P 		2142.4
(0.6)
P 		1408.7
(-3)
P 		1213
B 2214.8
(0.9)
P 		2210.3
(0.8)
P 		2706
(3)
P 		2455.8
(1.9)
P 		2125.1
(0.5)
P 		1330.1
(-3)
P 		1376
C 1568.5
(-2.8)
P 		2293.2
(0.3)
P 		2940.2
(3)
P 		2518.6
(1.2)
P 		1697.9
(-2.3)
P 		1524.2
(-3)
P 		1416
avr 2048.4
(-0.1) 		2235.9
(0.7) 		2739.9
(3) 		2532.1
(2.1) 		1988.5
(-0.4) 		1421
(-3) 		1319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 495
(3)
P 		348.8
(1.2)
P 		482.4
(2.8)
P 		0.7
(-3)
A 		494
B 520
(3)
P 		391
(1.5)
P 		386.6
(1.5)
P 		1.1
(-3)
A 		519
C 393.5
(0.9)
P 		435.2
(1.3)
P 		600.7
(3)
P 		4.9
(-3)
A 		596
avr 469.5
(2.7) 		391.7
(1.8) 		489.9
(3) 		2.2
(-3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 435.4
(-1.7)
P 		783.9
(3)
P 		560.5
(-0)
P 		664.9
(1.4)
P 		646.5
(1.1)
P 		343
(-3)
P 		441
B 770.7
(1.5)
P 		735.7
(0.9)
P 		657.1
(-0.4)
P 		650.5
(-0.5)
P 		863.4
(3)
P 		496
(-3)
P 		367
C 581.4
(-1.1)
P 		699.7
(1.8)
P 		748.3
(3)
P 		506.5
(-3)
P 		549.4
(-1.9)
P 		510.2
(-2.9)
P 		242
avr 595.8
(0) 		739.8
(3) 		655.3
(1.3) 		607.3
(0.3) 		686.4
(1.9) 		449.7
(-3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17913
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.1 NCBI
Target Description Y7A5A.1 /REP_DB=WormBase Gene ID /WP=CE21326 /TR=Q9XVZ2 /GB=CAA22461.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078193 NCBI Caenorhabditis elegans Y7A5A.1 (Y7A5A.1) mRNA, complete cds. 11/11 None
SNAP00000028075 ENSEMBL cdna:SNAP chromosome:CEL140:X:15767439:15769703:-1 11/11 None
GENEFINDER00000028098 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15767439:15771409:-1 11/11 None
Y7A5A.1.1 ENSEMBL cdna:known chromosome:CEL140:X:15767372:15771411:-1 gene:Y7A5A.1 11/11 None
Y7A5A.1.2 ENSEMBL cdna:known chromosome:CEL140:X:15767372:15771427:-1 gene:Y7A5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15767438-15771409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.1
Entrez Gene 181666 Entrez gene
SwissProt Q9XVZ2 EMBL-EBI
WormBase CE21326 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22461 Hypothetical protein Y7A5A.1 [Caenorhabditis elegans] ref|NP_510594.1| Y7A5A.1 [Caenorhabditis elegans] 0.0
blast CAE63357 Hypothetical protein CBG07765 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 3.7E-22
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 3.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510594.1 1 20-42
Y7A5A.1.1 1 20-42
Y7A5A.1.2 1 20-42
GENEFINDER00000028098 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:177936_S_AT
cattcggaaatcaccccgtgttccgtgctttccttggctggctttgcccaccaaagccgg
cattcttgaaatttaccaccacacaagccgtcagagaaatgacgttcgcgaagcaggtct
tccaagatattgtaatgccattggacacattgaaagagcaagttgacactgctgtaaagt
tgtttgatacgtacccactactggtgtacccatgtagaatttacgatcacaagggaggtg
ccccacaaggacagttgagagcgccaccaaaatctcgcttggtacctggaacaaattatt
caatgttcaatgatcttggtgtctatggtacccctggacaagtggaacgtcgtgagccat
acaacccaactcatgcgatgagagctatggaaaaattcacccgcgacgtcggtggttact
ccttcctttatgcagatattttcatgagcgaggaagaatttaatgagatgttcgacatga
ctctttacaatcaagtgcgtcttagatatcactgcgacggagcattcccaagactttacg
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGGAAATCACCCCGTGTTCCG 245 215 1022 Antisense
TGCCCACCAAAGCCGGCATTCTTGA 624 583 1066 Antisense
GACGTTCGCGAAGCAGGTCTTCCAA 573 377 1122 Antisense
TACCCACTACTGGTGTACCCATGTA 623 649 1213 Antisense
AAAATCTCGCTTGGTACCTGGAACA 417 133 1290 Antisense
TGATCTTGGTGTCTATGGTACCCCT 365 563 1332 Antisense
TGGTACCCCTGGACAAGTGGAACGT 537 549 1347 Antisense
CCATACAACCCAACTCATGCGATGA 673 269 1378 Antisense
GTTACTCCTTCCTTTATGCAGATAT 145 447 1436 Antisense
GATATCACTGCGACGGAGCATTCCC 649 425 1526 Antisense
GGAGCATTCCCAAGACTTTACGACA 420 519 1540 Antisense
Sequence Source Affymetrix Proprietary Database