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[177935_at]

Description T05F1.2 /REP_DB=WormBase Gene ID /WP=CE18929 /TR=Q9XUR4 /GB=CAB04690.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 29.6
(-3)
A 		95.5
(0.9)
A 		92.4
(0.7)
A 		130.3
(3)
P 		101
B 44.3
(-2.1)
A 		77.2
(0.9)
A 		34.4
(-3)
A 		100.1
(3)
P 		66
C 66
(-2.5)
A 		122.2
(3)
A 		61.3
(-3)
A 		92.1
(0)
P 		61
avr 46.6
(-3) 		98.3
(2.1) 		62.7
(-1.4) 		107.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1344
1 2 3 4 5 6 range
A 11.2
(-3)
A 		79.2
(-2.7)
A 		87.6
(-2.6)
P 		187.7
(-2.1)
P 		557.9
(-0.3)
P 		1245.6
(3)
P 		1234
B 40.4
(-3)
A 		84.8
(-2.8)
A 		96.9
(-2.7)
P 		150.1
(-2.5)
P 		603.7
(-0.4)
P 		1354.9
(3)
P 		1315
C 85.4
(-3)
A 		114.5
(-2.8)
A 		87.2
(-3)
P 		158.9
(-2.6)
P 		449.2
(-1)
P 		1200.3
(3)
P 		1115
avr 45.7
(-3) 		92.8
(-2.8) 		90.6
(-2.8) 		165.6
(-2.4) 		536.9
(-0.6) 		1266.9
(3) 		1221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.8
(-3)
A 		20.7
(1.5)
A 		24.1
(3)
A 		19.1
(0.7)
P 		13
B 14.1
(-0.2)
A 		19.1
(2)
A 		8
(-3)
A 		21.3
(3)
P 		13
C 21.9
(-1)
A 		35.1
(3)
A 		21.4
(-1.2)
A 		15.5
(-3)
P 		20
avr 15.6
(-3) 		25
(3) 		17.8
(-1.6) 		18.6
(-1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 2.1
(-3)
A 		28.2
(-2.5)
A 		19.1
(-2.7)
P 		47.6
(-2.1)
P 		168.3
(0.3)
P 		303.3
(3)
P 		301
B 14.1
(-3)
A 		28.2
(-2.8)
A 		23.5
(-2.9)
P 		39.7
(-2.7)
P 		245.3
(-0.2)
P 		505.2
(3)
P 		491
C 31.6
(-2.9)
A 		34.9
(-2.8)
A 		22.2
(-3)
P 		32
(-2.8)
P 		145.4
(-1.1)
P 		401.8
(3)
P 		380
avr 15.9
(-3) 		30.4
(-2.8) 		21.6
(-2.9) 		39.8
(-2.6) 		186.3
(-0.4) 		403.4
(3) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1467
Sequence Type Exemplar sequence
Representative Public ID T05F1.2 NCBI
Target Description T05F1.2 /REP_DB=WormBase Gene ID /WP=CE18929 /TR=Q9XUR4 /GB=CAB04690.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060153 NCBI Caenorhabditis elegans T05F1.2 (T05F1.2) mRNA, complete cds. 11/11 None
SNAP00000020940 ENSEMBL cdna:SNAP chromosome:CEL140:I:9630744:9632728:1 11/11 None
GENEFINDER00000020959 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9630744:9632728:1 11/11 None
T05F1.2 ENSEMBL cdna:known chromosome:CEL140:I:9630670:9633012:1 gene:T05F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9630674-9632659(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.2
Entrez Gene 172804 Entrez gene
SwissProt Q9XUR4 EMBL-EBI
WormBase CE18929 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04690 Hypothetical protein T05F1.2 [Caenorhabditis elegans] ref|NP_492554.1| T05F1.2 [Caenorhabditis elegans] 0.0
blast CAE60156 Hypothetical protein CBG03708 [Caenorhabditis briggsae] 9.0E-78
Sequence
Target Sequence 
>C. ELEGANS:177935_AT
tcaccgtctgcggagtgtcactatcaatctcgattgcccgttatcaaagagcgaaccgat
tttgaatggtctccaatattcgaagacaagcgatattgagttatcgtctccgcttacgaa
ggctgttgaaaagaacaactatatttcgtacgttctatatcgtgagtggaaagtgttgcg
tcccgatggcctgcaatcgacacgtggttttcaaaaagaatctctttcgtctgggtatgg
aagctctcttcctggttccggaccttcgactcctccatcggaatcaaatatagaagaagc
aggagttactccgacgaacgccgaatccaaaaacatgtcctcagggcagcacagtaaaca
aaactcaagtgatgagactcaatctcgagaccgatctggttcgggtgtatcaggaacttc
atcgaatggcgaggtatcatctactccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGTCTGCGGAGTGTCACTATC 323 625 1167 Antisense
TCAATCTCGATTGCCCGTTATCAAA 595 633 1190 Antisense
TATCGTCTCCGCTTACGAAGGCTGT 133 653 1268 Antisense
GCCTGCAATCGACACGTGGTTTTCA 322 279 1355 Antisense
GAATCTCTTTCGTCTGGGTATGGAA 89 327 1384 Antisense
GTATGGAAGCTCTCTTCCTGGTTCC 320 453 1401 Antisense
TTCGACTCCTCCATCGGAATCAAAT 381 695 1431 Antisense
GCAGGAGTTACTCCGACGAACGCCG 200 311 1465 Antisense
AAACATGTCCTCAGGGCAGCACAGT 534 127 1497 Antisense
GACTCAATCTCGAGACCGATCTGGT 678 373 1542 Antisense
AATGGCGAGGTATCATCTACTCCGG 124 163 1591 Antisense
Sequence Source Affymetrix Proprietary Database