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[177934_s_at]

Description C06A1.6 /REP_DB=WormBase Gene ID /WP=CE20484 /TR=Q9XVX3 /GB=CAA90055.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 1.6
(-3)
A 		9.9
(-2.6)
A 		135.1
(3)
P 		5.5
(-2.8)
A 		134
B 10
(-2.6)
A 		5
(-2.9)
A 		140
(3)
P 		1.8
(-3)
A 		138
C 2.1
(-3)
A 		11.7
(-2.6)
A 		137.3
(3)
P 		24.5
(-2)
A 		135
avr 4.6
(-3) 		8.9
(-2.8) 		137.5
(3) 		10.6
(-2.7) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 3.4
(-3)
A 		4.3
(-3)
A 		40.7
(-1.8)
A 		67.4
(-1)
A 		89.8
(-0.2)
A 		190.8
(3)
P 		187
B 2
(-3)
A 		1.9
(-3)
A 		50.5
(-1.8)
A 		47.5
(-1.9)
A 		87.3
(-1)
P 		253
(3)
P 		251
C 28.5
(-2.4)
A 		2.4
(-3)
A 		39
(-2.2)
A 		37.2
(-2.2)
A 		74.8
(-1.4)
P 		269.3
(3)
P 		267
avr 11.3
(-2.8) 		2.9
(-3) 		43.4
(-2) 		50.7
(-1.8) 		84
(-0.9) 		237.7
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 0.6
(-3)
A 		2.2
(-2.7)
A 		35.3
(3)
P 		0.8
(-3)
A 		35
B 3.2
(-2.5)
A 		1.2
(-2.9)
A 		32.4
(3)
P 		0.4
(-3)
A 		32
C 0.7
(-3)
A 		3.4
(-2.7)
A 		47.8
(3)
P 		4.1
(-2.6)
A 		47
avr 1.5
(-3) 		2.3
(-2.9) 		38.5
(3) 		1.8
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.5
(-2.9)
A 		8.9
(-1.9)
A 		17.1
(-0.8)
A 		27.1
(0.5)
A 		46.5
(3)
P 		46
B 0.7
(-3)
A 		0.6
(-3)
A 		12.3
(-2.3)
A 		12.6
(-2.2)
A 		35.5
(-0.8)
P 		94.3
(3)
P 		94
C 10.6
(-2.3)
A 		0.7
(-3)
A 		9.9
(-2.4)
A 		7.5
(-2.5)
A 		24.2
(-1.4)
P 		90.1
(3)
P 		89
avr 4
(-2.8) 		0.9
(-3) 		10.4
(-2.3) 		12.4
(-2.1) 		28.9
(-0.8) 		77
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3281
Sequence Type Exemplar sequence
Representative Public ID C06A1.6 NCBI
Target Description C06A1.6 /REP_DB=WormBase Gene ID /WP=CE20484 /TR=Q9XVX3 /GB=CAA90055.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063873 NCBI Caenorhabditis elegans C06A1.6 (C06A1.6) mRNA, complete cds. 11/11 None
C06A1.6 ENSEMBL cdna:known chromosome:CEL140:II:10564085:10564588:-1 gene:C06A1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026751 7/11 Cross Hyb Matching Probes None
NM_063458 1/11 Cross Hyb Matching Probes A 
SNAP00000011342 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011348 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011350 6/11 Cross Hyb Matching Probes None
SNAP00000025610 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025629 1/11 Cross Hyb Matching Probes None
T01B7.8 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10564081-10564583(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A1.6
Entrez Gene 174625 Entrez gene
SwissProt Q9XVX3 EMBL-EBI
WormBase CE20484 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4519 endonuclease activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90055 Hypothetical protein C06A1.6 [Caenorhabditis elegans] ref|NP_496274.1| C06A1.6 [Caenorhabditis elegans] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:177934_S_AT
ggatctacattagttgtactgatttatacaattgtatcgatttcacaggttgaatcagga
gttttgccagtatcaacaacagaaatatctataatttcatctgaaacatcaattatcgga
tcttctcgtgttaaaagaaatggaggatgttgtggatgttgtggatgtggaggaggtggt
ggtggatgtggatgttgctgttgcagaccaagatgctgctgctgttgtagacccaaatgt
tgttgtacttgttgtagaacttgttgctgtactagatgttgtacctgctgtagaccatgc
tgttgtggatgtggttgcggatgcggatgctgtggatgtggaggtggaggtcgtaaacgt
cgttcccttcaaaaacttcaaattgatgaagctaatcgtgctcttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTACATTAGTTGTACTGATTT 453 509 31 Antisense
CAATTGTATCGATTTCACAGGTTGA 38 171 59 Antisense
GGTTGAATCAGGAGTTTTGCCAGTA 282 507 78 Antisense
GAGTTTTGCCAGTATCAACAACAGA 261 399 89 Antisense
AACATCAATTATCGGATCTTCTCGT 17 139 135 Antisense
GGATGTGGATGTTGCTGTTGCAGAC 134 515 214 Antisense
GATGTTGCTGTTGCAGACCAAGATG 117 411 221 Antisense
GTTGCTGTACTAGATGTTGTACCTG 626 439 293 Antisense
ATGTTGTACCTGCTGTAGACCATGC 640 45 306 Antisense
TACCTGCTGTAGACCATGCTGTTGT 245 649 312 Antisense
GATGAAGCTAATCGTGCTCTTGGAA 261 413 415 Antisense
Sequence Source Affymetrix Proprietary Database