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[177933_at]

Description T19H5.3 /REP_DB=WormBase Gene ID /WP=CE01674 /TR=Q22597 /GB=CAA87664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 21.7
(-1.7)
A 		28.2
(-1)
A 		9
(-3)
A 		65.6
(3)
A 		57
B 34.2
(2.3)
A 		2.8
(-3)
A 		28.9
(1.4)
A 		38.5
(3)
A 		36
C 52.1
(1.6)
A 		3.4
(-3)
A 		5.7
(-2.8)
A 		67.6
(3)
P 		64
avr 36
(0.2) 		11.5
(-3) 		14.5
(-2.6) 		57.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 9.1
(-2.7)
A 		11.2
(-2.5)
A 		85.2
(3)
P 		29.1
(-1.2)
A 		5
(-3)
A 		35.9
(-0.7)
A 		80
B 26.6
(0.7)
A 		31
(1.7)
A 		37.2
(3)
A 		9.6
(-3)
A 		31.3
(1.7)
A 		21.5
(-0.4)
A 		28
C 2
(-3)
A 		56.2
(2.5)
P 		29
(-0.2)
A 		61
(3)
A 		1.9
(-3)
A 		31.4
(-0)
A 		59
avr 12.6
(-3) 		32.8
(0.2) 		50.5
(3) 		33.2
(0.3) 		12.7
(-3) 		29.6
(-0.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.9
(1.6)
A 		6.1
(0.1)
A 		2.3
(-3)
A 		9.6
(3)
A 		7
B 10.9
(3)
A 		0.7
(-3)
A 		6.7
(0.5)
A 		8.2
(1.4)
A 		10
C 17.2
(3)
A 		1
(-3)
A 		2
(-2.6)
A 		11.4
(0.9)
P 		16
avr 12
(3) 		2.6
(-3) 		3.7
(-2.3) 		9.7
(1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		4
(-2.1)
A 		18.6
(3)
P 		7.4
(-0.9)
A 		1.5
(-3)
A 		8.7
(-0.5)
A 		17
B 9.3
(1)
A 		10.3
(1.6)
A 		9
(0.8)
A 		2.6
(-3)
A 		12.7
(3)
A 		8
(0.2)
A 		10
C 0.8
(-2.9)
A 		17.1
(3)
P 		7.4
(-0.5)
A 		12.3
(1.3)
A 		0.6
(-3)
A 		10.5
(0.6)
A 		17
avr 3.9
(-3) 		10.5
(2.1) 		11.7
(3) 		7.4
(-0.3) 		4.9
(-2.2) 		9.1
(1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3350
Sequence Type Exemplar sequence
Representative Public ID T19H5.3 NCBI
Target Description T19H5.3 /REP_DB=WormBase Gene ID /WP=CE01674 /TR=Q22597 /GB=CAA87664.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063634 NCBI Caenorhabditis elegans T19H5.3 (T19H5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000023260 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9477780:9479445:1 11/11 None
T19H5.3 ENSEMBL cdna:known chromosome:CEL140:II:9477780:9479445:1 gene:T19H5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023256 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9477776-9479442(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19H5.3
Entrez Gene 188616 Entrez gene
SwissProt Q22597 EMBL-EBI
WormBase CE01674 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87664 Hypothetical protein T19H5.3 [Caenorhabditis elegans] ref|NP_496035.1| T19H5.3 [Caenorhabditis elegans] 0.0
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 3.0E-22
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.3E-23
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496035.1 1 36-58
T19H5.3 1 36-58
GENEFINDER00000023260 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:177933_AT
tgttctcggtttctttgtgaattgaaacaaaagctaaaagaacgaaagaaaaattatgtg
ctctctgtgcaaattctgcctgatgagccatcgagttgggagctgttcaatcctgcaaat
gggtcacctctcaatattcaagtggaggactgcaacaccggaccagatacagaagtcgtg
gagccgagtgactcagaactggaatctaccgaaaataactcaaagaaacttaccgtcgac
attttcaaattttgttatattacatcggatggaaatcttcaatttgaggatgagattgct
atgaaattatttttaaagttaaaggagcaagctagatcggaaaatttgaaactggaattg
atatttaaaattgatgggcgcacgaatacattcttattttcctctgttatactggctcat
gataagaaaagaaaattcattaattctgtcatctcgtttctaaaagaatatcggcttggt
aactcggactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCGGTTTCTTTGTGAATTGA 293 561 607 Antisense
TGTGCTCTCTGTGCAAATTCTGCCT 372 557 663 Antisense
GAGCCATCGAGTTGGGAGCTGTTCA 523 383 691 Antisense
TCAATCCTGCAAATGGGTCACCTCT 278 633 713 Antisense
ATGGGTCACCTCTCAATATTCAAGT 151 51 725 Antisense
AAGTGGAGGACTGCAACACCGGACC 336 157 746 Antisense
GAAGTCGTGGAGCCGAGTGACTCAG 210 335 778 Antisense
TGATGGGCGCACGAATACATTCTTA 317 567 978 Antisense
TTTCCTCTGTTATACTGGCTCATGA 661 667 1004 Antisense
TAATTCTGTCATCTCGTTTCTAAAA 307 635 1047 Antisense
ATATCGGCTTGGTAACTCGGACTTA 531 5 1074 Antisense
Sequence Source Affymetrix Proprietary Database