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[177931_at]

Description R03C1.2 /REP_DB=WormBase Gene ID /WP=CE16281 /TR=O17979 /GB=CAB05261.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 959
1 2 3 4 range
A 71.8
(-3)
A 		1031.1
(3)
P 		771.1
(1.4)
P 		172.4
(-2.4)
A 		959
B 165.7
(-2.7)
A 		901.4
(3)
P 		786.1
(2.1)
P 		123.6
(-3)
P 		778
C 91.9
(-3)
A 		940.5
(3)
P 		756.6
(1.7)
P 		109.4
(-2.9)
A 		849
avr 109.8
(-3) 		957.7
(3) 		771.3
(1.7) 		135.1
(-2.8) 		848

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 294.5
(-2.6)
A 		572.9
(3)
P 		290.8
(-2.7)
P 		320.9
(-2.1)
P 		401.8
(-0.4)
P 		274.9
(-3)
P 		298
B 275.8
(-3)
P 		495.6
(3)
P 		341.4
(-1.2)
M 		355.9
(-0.8)
P 		464.7
(2.2)
P 		332.1
(-1.5)
P 		220
C 151.8
(-3)
P 		507.4
(3)
P 		367.9
(0.6)
P 		248.9
(-1.4)
P 		418.1
(1.5)
P 		343.2
(0.2)
P 		356
avr 240.7
(-3) 		525.3
(3) 		333.4
(-1) 		308.6
(-1.6) 		428.2
(1) 		316.7
(-1.4) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 26.1
(-3)
A 		223.8
(3)
P 		201.6
(2.3)
P 		25.2
(-3)
A 		199
B 52.9
(-2.2)
A 		222.6
(3)
P 		182.2
(1.8)
P 		26.3
(-3)
P 		196
C 30.4
(-2.7)
A 		270.4
(3)
P 		263.7
(2.8)
P 		18.5
(-3)
A 		252
avr 36.5
(-2.6) 		238.9
(3) 		215.8
(2.4) 		23.3
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 54.3
(-3)
A 		203.8
(3)
P 		63.3
(-2.6)
P 		81.4
(-1.9)
P 		121.3
(-0.3)
P 		66.9
(-2.5)
P 		150
B 96
(-2.3)
P 		164.9
(1.6)
P 		82.9
(-3)
M 		94.3
(-2.4)
P 		188.8
(3)
P 		123.9
(-0.7)
P 		106
C 56.3
(-2.6)
P 		154.8
(3)
P 		93.6
(-0.5)
P 		50.1
(-3)
P 		135.3
(1.9)
P 		114.9
(0.7)
P 		105
avr 68.9
(-3) 		174.5
(3) 		79.9
(-2.4) 		75.3
(-2.6) 		148.5
(1.5) 		101.9
(-1.1) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3384
Sequence Type Exemplar sequence
Representative Public ID R03C1.2 NCBI
Target Description R03C1.2 /REP_DB=WormBase Gene ID /WP=CE16281 /TR=O17979 /GB=CAB05261.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064682
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004736 ENSEMBL cdna:SNAP chromosome:CEL140:II:14907489:14910291:-1 10/11 None
GENEFINDER00000004745 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14907489:14910291:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064682 3/11 Cross Hyb Matching Probes None
R03C1.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14907485-14908557(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE73439 Hypothetical protein CBG20883 [Caenorhabditis briggsae] 1.0E-151
blast CAE73439 Hypothetical protein CBG20883 [Caenorhabditis briggsae] 1.0E-141
blast T23867 hypothetical protein R03C1.2 - Caenorhabditis elegans 2.0E-88
blast T23867 hypothetical protein R03C1.2 - Caenorhabditis elegans 3.0E-79
blast CAB05259 Hypothetical protein R03C1.1 [Caenorhabditis elegans] ref|NP_497083.2| R03C1.1 [Caenorhabditis elegans] 4.0E-79
blast CAB05259 Hypothetical protein R03C1.1 [Caenorhabditis elegans] ref|NP_497083.2| R03C1.1 [Caenorhabditis elegans] 9.0E-70
Sequence
Target Sequence 
>C. ELEGANS:177931_AT
tatacccggccatcggacagttggccaccggacaagagacgtgctattgtcttgatccga
ccaccagtgtcatgtccgggtgtggatgcaggtgtaactgtgccacgttgatggttactg
taccaaatgcgtactgtgggtgcccacagccaggacaacaacagcaacaggttcaatacg
acacctacgagtacgctccagttcagaccaccccgacaccaatgccaaccactcaagtcc
caactacccaggctccaaccacccaggccccaaccatgccaacttcctcaagcccggttc
aatatgccgacaccgcggccacccaatacccgctgacaaccacatgtgtgatgtacgtga
acgtgcctaccaccgcctgctcgtgccttccacaatacgaccagtgtgctcagaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACCCGGCCATCGGACAGTTGGC 66 629 236 Antisense
GTTGGCCACCGGACAAGAGACGTGC 333 433 255 Antisense
GACGTGCTATTGTCTTGATCCGACC 417 375 273 Antisense
CGACCACCAGTGTCATGTCCGGGTG 40 251 293 Antisense
GATGCAGGTGTAACTGTGCCACGTT 165 413 320 Antisense
GTGCCACGTTGATGGTTACTGTACC 79 479 335 Antisense
ACCAAATGCGTACTGTGGGTGCCCA 435 83 357 Antisense
TACGAGTACGCTCCAGTTCAGACCA 324 649 421 Antisense
CTTCCTCAAGCCCGGTTCAATATGC 513 219 518 Antisense
GATGTACGTGAACGTGCCTACCACC 381 409 585 Antisense
CAATACGACCAGTGTGCTCAGAATA 218 179 628 Antisense
Sequence Source Affymetrix Proprietary Database