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[177930_at]

Description Y7A5A.6 /REP_DB=WormBase Gene ID /WP=CE21331 /TR=Q9XVY8 /GB=CAA22466.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 78.8
(-1.3)
P 		41.9
(-2.4)
P 		22.2
(-3)
A 		222.4
(3)
P 		200
B 76.8
(-1.2)
A 		62.2
(-1.7)
P 		27.1
(-3)
A 		189.3
(3)
P 		162
C 107.4
(-1)
P 		62
(-2)
P 		15.1
(-3)
A 		292.5
(3)
P 		277
avr 87.7
(-1.1) 		55.4
(-2) 		21.5
(-3) 		234.7
(3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 46.4
(-0.2)
A 		41
(-0.8)
P 		74.5
(3)
A 		42.7
(-0.6)
A 		21
(-3)
A 		21.2
(-3)
A 		54
B 77.3
(3)
A 		58.2
(0.9)
A 		54.5
(0.5)
P 		33.1
(-1.8)
A 		58.5
(0.9)
A 		22.6
(-3)
M 		55
C 69.1
(2.9)
P 		70.5
(3)
A 		9.8
(-3)
A 		16.4
(-2.3)
A 		36.7
(-0.3)
A 		52.4
(1.2)
P 		61
avr 64.3
(3) 		56.6
(1.6) 		46.3
(-0.2) 		30.7
(-3) 		38.7
(-1.6) 		32.1
(-2.8) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 28.7
(2.1)
P 		9.1
(-2.3)
P 		5.8
(-3)
A 		32.5
(3)
P 		27
B 24.5
(0.2)
A 		15.4
(-1.4)
P 		6.3
(-3)
A 		40.3
(3)
P 		34
C 35.6
(1.1)
P 		17.8
(-1.3)
P 		5.3
(-3)
A 		49.3
(3)
P 		44
avr 29.6
(1.1) 		14.1
(-1.6) 		5.8
(-3) 		40.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.6
(-1.1)
A 		14.6
(2.1)
P 		16.2
(3)
A 		10.8
(0.1)
A 		6.3
(-2.4)
A 		5.2
(-3)
A 		11
B 26.9
(3)
A 		19.4
(0.6)
A 		13.2
(-1.4)
P 		8.8
(-2.9)
A 		23.8
(2)
A 		8.4
(-3)
M 		19
C 25.6
(3)
P 		21.5
(1.9)
A 		2.5
(-3)
A 		3.3
(-2.8)
A 		11.9
(-0.6)
A 		17.5
(0.9)
P 		23
avr 20.4
(3) 		18.5
(2.1) 		10.6
(-1.6) 		7.6
(-3) 		14
(0) 		10.4
(-1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17879
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.6 NCBI
Target Description Y7A5A.6 /REP_DB=WormBase Gene ID /WP=CE21331 /TR=Q9XVY8 /GB=CAA22466.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078198 NCBI Caenorhabditis elegans Y7A5A.6 (Y7A5A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000028094 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15797179:15799613:-1 10/11 None
Y7A5A.6 ENSEMBL cdna:known chromosome:CEL140:X:15797250:15799613:-1 gene:Y7A5A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028082 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15797249-15799613(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.6
Entrez Gene 189385 Entrez gene
SwissProt Q9XVY8 EMBL-EBI
WormBase CE21331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22466 Hypothetical protein Y7A5A.6 [Caenorhabditis elegans] ref|NP_510599.1| Y7A5A.6 [Caenorhabditis elegans] 1.0E-67
blast CAA22466 Hypothetical protein Y7A5A.6 [Caenorhabditis elegans] ref|NP_510599.1| Y7A5A.6 [Caenorhabditis elegans] 9.0E-58
Sequence
Target Sequence 
>C. ELEGANS:177930_AT
ggacaccgattcattcacagtgtactttgaaaccatcaggcagattcgtaacgaggctga
acttctagtgaagcaaattgacgaagcaatggaatatctgaaaaacacatttgctgacta
taaccactgggaagcggaaatggcaaagaaataccagggcctaacatcaaccttttcatc
gacggaaatggtgtcaaggagtaacaaacgggtttcagcttctacgttggtaaaggaacc
atggaaggcatttgtccttccactgtttgaggtcataagcttcaatagcaccttctcgag
gattttacgaattctgctggacactgtcggtgtgcttgtgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACACCGATTCATTCACAGTGTAC 471 525 15 Antisense
GAAACCATCAGGCAGATTCGTAACG 280 359 43 Antisense
TCGTAACGAGGCTGAACTTCTAGTG 448 601 60 Antisense
ACATTTGCTGACTATAACCACTGGG 268 105 121 Antisense
AATACCAGGGCCTAACATCAACCTT 426 173 164 Antisense
AACATCAACCTTTTCATCGACGGAA 418 135 177 Antisense
CAAACGGGTTTCAGCTTCTACGTTG 612 189 219 Antisense
ATTTGTCCTTCCACTGTTTGAGGTC 670 15 264 Antisense
AATAGCACCTTCTCGAGGATTTTAC 630 171 298 Antisense
TTTACGAATTCTGCTGGACACTGTC 306 673 318 Antisense
GGACACTGTCGGTGTGCTTGTGTGT 67 527 333 Antisense
Sequence Source Affymetrix Proprietary Database