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[177928_at]

Description F19B2.4 /REP_DB=WormBase Gene ID /WP=CE20696 /TR=Q9XXS7 /GB=CAA16272.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 09      6grp_cgc > 41      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 19.1
(-3)
A 		30.3
(-2.3)
P 		29.1
(-2.4)
A 		114.3
(3)
P 		95
B 21.7
(-3)
A 		44.9
(-1.1)
M 		45.8
(-1)
A 		95.2
(3)
P 		74
C 21.4
(-3)
A 		30.8
(-2.4)
A 		23
(-2.9)
P 		116.5
(3)
P 		95
avr 20.7
(-3) 		35.3
(-2) 		32.6
(-2.2) 		108.7
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 36.4
(1.9)
A 		33.1
(1.2)
A 		20.3
(-1.5)
A 		23.8
(-0.8)
A 		41.7
(3)
A 		13.3
(-3)
A 		28
B 44.3
(2.9)
A 		44.9
(3)
P 		35
(1.2)
A 		21.1
(-1.4)
A 		17.6
(-2)
A 		12.2
(-3)
A 		33
C 21.8
(-0.4)
A 		41
(2.3)
P 		5.8
(-2.6)
A 		45.6
(3)
A 		3.2
(-3)
A 		13.3
(-1.6)
A 		42
avr 34.2
(1.8) 		39.7
(3) 		20.4
(-1.3) 		30.2
(0.9) 		20.8
(-1.2) 		12.9
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.9
(-2.8)
A 		6.6
(-3)
P 		7.6
(-2.4)
A 		16.7
(3)
P 		10
B 6.9
(-3)
A 		11.1
(-1.1)
M 		10.6
(-1.3)
A 		20.3
(3)
P 		13
C 7.1
(-3)
A 		8.9
(-2.1)
A 		8
(-2.6)
P 		19.6
(3)
P 		13
avr 7
(-3) 		8.9
(-2) 		8.7
(-2.1) 		18.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.7
(-0.8)
A 		11.8
(2.5)
A 		4.4
(-2.2)
A 		6
(-1.2)
A 		12.6
(3)
A 		3.2
(-3)
A 		9
B 15.4
(3)
A 		15
(2.8)
P 		8.5
(-0.8)
A 		5.6
(-2.4)
A 		7.1
(-1.6)
A 		4.5
(-3)
A 		11
C 8.1
(0.7)
A 		12.5
(3)
P 		1.5
(-2.7)
A 		9.2
(1.3)
A 		1
(-3)
A 		4.4
(-1.2)
A 		12
avr 10.1
(1) 		13.1
(3) 		4.8
(-2.5) 		6.9
(-1.1) 		6.9
(-1.1) 		4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12700
Sequence Type Exemplar sequence
Representative Public ID F19B2.4 NCBI
Target Description F19B2.4 /REP_DB=WormBase Gene ID /WP=CE20696 /TR=Q9XXS7 /GB=CAA16272.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F19B2.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:20165306:20167280:1 gene:F19B2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019287 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20165585-20167280(+) 100.0 100.0
Public Domain and Genome References
Ensembl F19B2.4
Sequence
Target Sequence 
>C. ELEGANS:177928_AT
ccatttattttttcccatctactgagaaatttgtgatgtcagcgcaaaagtatcagataa
aacatgtcagatatatgtatttagtgatattcattgttcagtcaattctgacattgaatg
cgttcggagttcgattttggaacataaatgaaattaagatacgatcgataatatacataa
gctttaatatcatattcatactctcggccttgctatacgttcccataatgttcagcgtta
gaaagttttccaaccttccgtcggttcaacagaacaaaccgcaactatacattttctggc
agaccatcaacattttgatttttaaatttacgtttattgctgcatttattgcatgcctgt
tcgcgcagcaagcgtttgaggaattagttgttcttatgatgtttttggatattgttgtta
ttccacaaattgttcaaatatcatatatcagttgtaacaagcgaaatatggatactttgt
tgaagtcgttcagttgcattaaatttactagaattgtgtttaatagacaaaagacaacgt
ccattgcgccacaggattggagactcaattctaataattctaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTTATTTTTTCCCATCTACTGA 389 269 212 Antisense
ATTTTTTCCCATCTACTGAGAAATT 37 15 218 Antisense
AAACCGCAACTATACATTTTCTGGC 210 127 487 Antisense
ATTTTCTGGCAGACCATCAACATTT 127 13 502 Antisense
TTCTGGCAGACCATCAACATTTTGA 631 693 505 Antisense
AATTTACGTTTATTGCTGCATTTAT 485 175 536 Antisense
TGCTGCATTTATTGCATGCCTGTTC 66 583 549 Antisense
GCATTTATTGCATGCCTGTTCGCGC 472 307 553 Antisense
CCTGTTCGCGCAGCAAGCGTTTGAG 225 265 567 Antisense
CAAAAGACAACGTCCATTGCGCCAC 190 191 739 Antisense
GAGACTCAATTCTAATAATTCTAAA 105 391 771 Antisense
Sequence Source Affymetrix Proprietary Database