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[177927_at]

Description C29F3.3 /REP_DB=WormBase Gene ID /WP=CE08437 /TR=O17614 /GB=CAB02801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 56      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 24.2
(-3)
A 		368.7
(0.3)
P 		664.1
(3)
P 		18.9
(-3)
A 		645
B 31.3
(-2.9)
A 		351.6
(-0.2)
P 		737.6
(3)
P 		15.8
(-3)
A 		722
C 28.2
(-3)
A 		338.6
(0.1)
P 		638.1
(3)
P 		51.9
(-2.8)
A 		610
avr 27.9
(-3) 		353
(-0) 		679.9
(3) 		28.9
(-3) 		652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 172
(3)
P 		55
(-1.6)
P 		47.6
(-1.8)
A 		54.6
(-1.6)
A 		31.5
(-2.5)
A 		18
(-3)
A 		154
B 112.2
(3)
P 		75.7
(0.8)
M 		31.6
(-1.9)
M 		19
(-2.7)
A 		13.5
(-3)
A 		23.1
(-2.4)
A 		99
C 171.3
(3)
P 		60
(-1.3)
P 		17.3
(-2.9)
A 		68.2
(-1)
P 		50
(-1.7)
A 		15.1
(-3)
A 		156
avr 151.8
(3) 		63.6
(-1) 		32.2
(-2.4) 		47.3
(-1.7) 		31.7
(-2.4) 		18.7
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 8.8
(-2.8)
A 		80
(-0.3)
P 		173.6
(3)
P 		2.8
(-3)
A 		171
B 10
(-2.8)
A 		86.8
(-0)
P 		170.9
(3)
P 		3.4
(-3)
A 		168
C 9.3
(-3)
A 		97.3
(-0.5)
P 		222.4
(3)
P 		8.7
(-3)
A 		214
avr 9.4
(-2.9) 		88
(-0.3) 		189
(3) 		5
(-3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 31.7
(3)
P 		19.6
(0.3)
P 		10.4
(-1.7)
A 		13.8
(-0.9)
A 		9.5
(-1.9)
A 		4.4
(-3)
A 		27
B 39
(3)
P 		25.2
(0.6)
M 		7.7
(-2.5)
M 		5
(-3)
A 		5.5
(-2.9)
A 		8.6
(-2.4)
A 		34
C 63.5
(3)
P 		18.3
(-1.6)
P 		4.4
(-3)
A 		13.7
(-2.1)
P 		16.2
(-1.8)
A 		5.1
(-2.9)
A 		59
avr 44.7
(3) 		21
(-0.7) 		7.5
(-2.8) 		10.8
(-2.3) 		10.4
(-2.3) 		6
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14129
Sequence Type Exemplar sequence
Representative Public ID C29F3.3 NCBI
Target Description C29F3.3 /REP_DB=WormBase Gene ID /WP=CE08437 /TR=O17614 /GB=CAB02801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074405 NCBI Caenorhabditis elegans C29F3.3 (C29F3.3) mRNA, complete cds. 11/11 None
SNAP00000013689 ENSEMBL cdna:SNAP chromosome:CEL140:V:15349310:15349869:-1 11/11 None
GENEFINDER00000013697 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15349310:15351696:-1 11/11 None
C29F3.3 ENSEMBL cdna:known chromosome:CEL140:V:15349310:15349974:-1 gene:C29F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15349309-15349974(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F3.3
Entrez Gene 183004 Entrez gene
SwissProt O17614 EMBL-EBI
WormBase CE08437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02798 Hypothetical protein C29F3.5 [Caenorhabditis elegans] ref|NP_506807.1| C29F3.5 [Caenorhabditis elegans] 4.0E-96
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 5.0E-68
blast CAB02800 Hypothetical protein C29F3.4 [Caenorhabditis elegans] ref|NP_506808.2| C29F3.4 [Caenorhabditis elegans] 6.0E-56
blast CAB02801 Hypothetical protein C29F3.3 [Caenorhabditis elegans] ref|NP_506806.1| C29F3.3 [Caenorhabditis elegans] 2.0E-52
blast CAB02801 Hypothetical protein C29F3.3 [Caenorhabditis elegans] ref|NP_506806.1| C29F3.3 [Caenorhabditis elegans] 3.0E-47
blast CAE62657 Hypothetical protein CBG06795 [Caenorhabditis briggsae] emb|CAE62655.1| Hypothetical protein CBG06793 [Caenorhabditis briggsae] 2.0E-25
blast CAA80147 Hypothetical protein ZK512.7 [Caenorhabditis elegans] ref|NP_499024.1| ZK512.7 [Caenorhabditis elegans] sp|P34645|YOQ7_CAEEL Hypothetical protein ZK512.7 in chromosome III 5.0E-25
blast CAE62657 Hypothetical protein CBG06795 [Caenorhabditis briggsae] emb|CAE62655.1| Hypothetical protein CBG06793 [Caenorhabditis briggsae] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:177927_AT
aaagcccaacaactagttcaactcgacgatcaaaatcatatacacaatcgtgtaaaaata
cttgatgctaattctcattacctcactggccaagaaactcccgtcgccatataccgccga
gtactccgacctgccaagatctcattcattgggaaaagcgtcgtgacagatcaatggaga
ggaaccaacgacgccgtggaactagattcatggactttaagcaagcgtccagttatcagt
ggagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCAACAACTAGTTCAACTCG 536 123 43 Antisense
AACTAGTTCAACTCGACGATCAAAA 68 141 53 Antisense
TGATGCTAATTCTCATTACCTCACT 503 565 105 Antisense
TTACCTCACTGGCCAAGAAACTCCC 78 667 120 Antisense
CGACCTGCCAAGATCTCATTCATTG 451 251 169 Antisense
GATCTCATTCATTGGGAAAAGCGTC 554 417 180 Antisense
AAGCGTCGTGACAGATCAATGGAGA 523 149 198 Antisense
GAACCAACGACGCCGTGGAACTAGA 519 343 224 Antisense
GGAACTAGATTCATGGACTTTAAGC 580 525 240 Antisense
GACTTTAAGCAAGCGTCCAGTTATC 16 371 255 Antisense
CAAGCGTCCAGTTATCAGTGGAGCG 15 187 264 Antisense
Sequence Source Affymetrix Proprietary Database