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[177926_s_at] 7TM chemoreceptor, srw family /// 7TM chemoreceptor, srw family

Description F19B2.3 /REP_DB=WormBase Gene ID /WP=CE23672 /TR=Q9XXT1 /GB=CAA16268.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 02      6grp_cgc > 52      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 13.9
(-2.3)
A 		7.5
(-2.9)
A 		6.2
(-3)
A 		75.6
(3)
P 		69
B 6.6
(-2.9)
A 		5
(-3)
A 		34.9
(-0.6)
A 		78.4
(3)
P 		73
C 4.2
(-2.9)
A 		14.5
(-2.6)
A 		2.1
(-3)
A 		168.4
(3)
P 		166
avr 8.2
(-3) 		9
(-3) 		14.4
(-2.6) 		107.5
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 24.4
(1)
A 		2.1
(-3)
A 		22.9
(0.7)
P 		7
(-2.1)
A 		35.9
(3)
A 		4.7
(-2.5)
A 		34
B 17.7
(0.2)
P 		31.7
(3)
P 		1.5
(-3)
A 		21.7
(1)
A 		7.2
(-1.9)
A 		9.2
(-1.5)
A 		30
C 0.9
(-3)
A 		33
(3)
A 		15.5
(-0.3)
A 		2.3
(-2.7)
A 		11.5
(-1)
A 		2.7
(-2.7)
A 		32
avr 14.3
(0.1) 		22.3
(3) 		13.3
(-0.2) 		10.3
(-1.3) 		18.2
(1.5) 		5.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 5.1
(-0.8)
A 		1.6
(-3)
A 		1.6
(-3)
A 		11.1
(3)
P 		10
B 2.1
(-2.7)
A 		1.2
(-3)
A 		8.1
(-0.3)
A 		16.7
(3)
P 		16
C 1.4
(-2.8)
A 		4.2
(-2.2)
A 		0.7
(-3)
A 		28.4
(3)
P 		28
avr 2.9
(-2.8) 		2.3
(-3) 		3.5
(-2.6) 		18.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.5
(-0.7)
A 		0.7
(-3)
A 		5
(-0.4)
P 		1.8
(-2.3)
A 		10.8
(3)
A 		1.1
(-2.8)
A 		10
B 6.1
(0.4)
P 		10.6
(3)
P 		0.4
(-3)
A 		5.8
(0.2)
A 		2.9
(-1.5)
A 		3.4
(-1.2)
A 		10
C 0.4
(-3)
A 		10.1
(3)
A 		4
(-0.8)
A 		0.5
(-2.9)
A 		3.7
(-1)
A 		0.9
(-2.7)
A 		10
avr 3.7
(-0.8) 		7.1
(3) 		3.1
(-1.5) 		2.7
(-2) 		5.8
(1.5) 		1.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12807
Sequence Type Exemplar sequence
Representative Public ID F19B2.3 NCBI
Target Description F19B2.3 /REP_DB=WormBase Gene ID /WP=CE23672 /TR=Q9XXT1 /GB=CAA16268.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075441(11), NM_075487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075441 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-38) (srw-38) mRNA, complete cds. 11/11 A 
NM_075487 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-39) (srw-39) mRNA, complete cds. 11/11 A 
GENEFINDER00000019293 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20167518:20170038:-1 11/11 None
Y116F11B.5 ENSEMBL cdna:known chromosome:CEL140:V:19834439:19837339:1 gene:Y116F11B.5 11/11 A 
F19B2.3 ENSEMBL cdna:known chromosome:CEL140:V:20168073:20170038:-1 gene:F19B2.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019288 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20167681-20170038(-) 88.44 93.78
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
7TM chemoreceptor, srw family
Gene Symbol srw-39
srw-38
Ensembl Y116F11B.5
F19B2.3
Entrez Gene 184662 Entrez gene
191017 Entrez gene
SwissProt Q9XXT1 EMBL-EBI
Q9GRV7 EMBL-EBI
WormBase CE20695 Wormbase
CE26050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 0.0
blast CAA16268 Hypothetical protein F19B2.3 [Caenorhabditis elegans] ref|NP_507888.1| Serpentine Receptor, class W family member (srw-39) [Caenorhabditis elegans] 1.0E-132
blast CAA16268 Hypothetical protein F19B2.3 [Caenorhabditis elegans] ref|NP_507888.1| Serpentine Receptor, class W family member (srw-39) [Caenorhabditis elegans] 1.0E-126
blast CAA16268 Hypothetical protein F19B2.3 [Caenorhabditis elegans] ref|NP_507888.1| Serpentine Receptor, class W family member (srw-39) [Caenorhabditis elegans] 1.0E-125
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-30
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.8E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507842.1 7 34-56,68-90,124-146,166-188,233-255,275-297,307-329
NP_507888.1 5 34-56,68-90,124-146,166-188,231-253
Y116F11B.5 7 34-56,68-90,124-146,166-188,233-255,275-297,307-329
F19B2.3 5 34-56,68-90,124-146,166-188,231-253
GENEFINDER00000019293 5 34-56,68-90,124-146,166-188,231-253
Sequence
Target Sequence 
>C. ELEGANS:177926_S_AT
caaacgctgttgtaactgggatgttgacctatttcactgttgccatggcaattatcagat
ttcttgtggtgaaatttccattagctagcggcatgcaacgccttatctactccaaaagtg
ggctgaaaattttactacccattataattctcatattacccctctggatagctgaaatat
ctagtacaaacatagttgagacaggcatctgggtccctggtccaaattgtgatggattcg
ctgaaaattatacagaaaaaatgtataccgttgagacatctattacatttggaatcgacg
agttttattggattgtctattacatatatgcagtgattttccagtttattccatcaatct
tacttccaatctctacagttttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGCTGTTGTAACTGGGATGTT 36 193 380 Antisense
GATGTTGACCTATTTCACTGTTGCC 62 411 399 Antisense
CCTATTTCACTGTTGCCATGGCAAT 223 269 407 Antisense
GGCAATTATCAGATTTCTTGTGGTG 253 535 426 Antisense
CTTATCTACTCCAAAAGTGGGCTGA 502 217 481 Antisense
ATATTACCCCTCTGGATAGCTGAAA 17 15 532 Antisense
AGTTGAGACAGGCATCTGGGTCCCT 422 63 573 Antisense
GTATACCGTTGAGACATCTATTACA 567 453 642 Antisense
GTGATTTTCCAGTTTATTCCATCAA 547 483 712 Antisense
ATTCCATCAATCTTACTTCCAATCT 178 9 727 Antisense
ACTTCCAATCTCTACAGTTTTGTTG 3 105 741 Antisense
Sequence Source Affymetrix Proprietary Database