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[177924_s_at]

Description F21D9.2 /REP_DB=WormBase Gene ID /WP=CE23679 /TR=Q9U3I2 /GB=CAB04161.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 14.9
(-3)
A 		33.6
(-0.1)
A 		24.4
(-1.5)
A 		53.4
(3)
P 		39
B 29.4
(1.1)
A 		36.8
(3)
A 		13.2
(-3)
A 		34
(2.3)
A 		24
C 3.1
(-2.9)
A 		17.8
(-2)
A 		1.3
(-3)
A 		98.9
(3)
P 		98
avr 15.8
(-2.7) 		29.4
(-1) 		13
(-3) 		62.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 31.6
(-0.8)
A 		2.8
(-2.9)
A 		1.9
(-3)
A 		6.5
(-2.7)
A 		51.6
(0.7)
M 		81.5
(3)
P 		80
B 1.6
(-3)
A 		15.5
(-1.5)
A 		1.3
(-3)
A 		26
(-0.4)
A 		45.4
(1.6)
P 		58.4
(3)
P 		57
C 32.8
(-0.2)
A 		9
(-2.4)
A 		2.2
(-3)
A 		57.3
(2)
A 		34.5
(-0.1)
P 		68.9
(3)
P 		67
avr 22
(-1.2) 		9.1
(-2.4) 		1.8
(-3) 		29.9
(-0.5) 		43.8
(0.7) 		69.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.4
(-3)
A 		7.3
(1.8)
A 		6.4
(-0.5)
A 		7.8
(3)
P 		2
B 9.4
(3)
A 		9.1
(2.7)
A 		3.1
(-3)
A 		7.2
(0.9)
A 		6
C 1
(-2.8)
A 		5.1
(-1.3)
A 		0.4
(-3)
A 		16.7
(3)
P 		16
avr 5.3
(-1.4) 		7.2
(0.2) 		3.3
(-3) 		10.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.8
(-1.3)
A 		1
(-2.8)
A 		0.4
(-3)
A 		1.6
(-2.6)
A 		15.6
(1.7)
M 		19.8
(3)
P 		19
B 0.5
(-2.9)
A 		5.2
(-1.6)
A 		0.3
(-3)
A 		6.9
(-1.2)
A 		18.4
(2.1)
P 		21.8
(3)
P 		22
C 12.1
(0.1)
A 		2.8
(-2.4)
A 		0.6
(-3)
A 		11.5
(-0.1)
A 		11.2
(-0.2)
P 		23.1
(3)
P 		23
avr 6.1
(-1.4) 		3
(-2.3) 		0.4
(-3) 		6.7
(-1.2) 		15.1
(1.2) 		21.6
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177924_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14298
Sequence Type Exemplar sequence
Representative Public ID F21D9.2 NCBI
Target Description F21D9.2 /REP_DB=WormBase Gene ID /WP=CE23679 /TR=Q9U3I2 /GB=CAB04161.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075346 NCBI Caenorhabditis elegans F21D9.2 (F21D9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022445 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19261151:19263799:-1 11/11 None
F21D9.2 ENSEMBL cdna:known chromosome:CEL140:V:19261124:19263813:-1 gene:F21D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19261150-19263025(-) 93.11 100.0
Public Domain and Genome References
Gene Title
Ensembl F21D9.2
Entrez Gene 180266 Entrez gene
SwissProt Q9U3I2 EMBL-EBI
WormBase CE38326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04161 Hypothetical protein F21D9.2 [Caenorhabditis elegans] ref|NP_507747.2| F21D9.2 [Caenorhabditis elegans] 0.0
blast CAB04161 Hypothetical protein F21D9.2 [Caenorhabditis elegans] ref|NP_507747.2| F21D9.2 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507747.2 6 78-100,129-151,172-194,204-226,239-261,265-287
F21D9.2 5 15-36,57-79,89-111,124-146,150-172
GENEFINDER00000022445 6 78-100,129-151,172-194,204-226,239-261,265-287
Sequence
Target Sequence 
>C. ELEGANS:177924_S_AT
atgacattgctgtacgcatccggattatttcgtttattacggtagcttcgttctttgcca
cattggtttttattatattttcaagtgtcaaattgtgttctatcgaaaaagaaaagagaa
tgaaaatttttctgagatacgtccagaaatatgcctcggaaattgctgtgcagccttaca
ttattcttctagctgttttgatttgtgtatatccggaaaccaagtttgacgacgatgaaa
aactctattacaacattggggcgattttattgtattttattgtaggttatttgaccgttg
ctgaattgagtattgagaaagcgtcaatgttttctcctagggaaacgaagattctttacg
ttttatggggttttttcgcccttctccatctgtcccctaatttttttggattatatataa
ccgtctcctgggcattcgcaccggctgttagcttttccgggcagtgctgtgcgatgcgat
gtgcgtactttctgggtaaaattaaaagtggcaaagtgactggcaatacacagagtcatg
agcagaataatatgcagaaccgtgagcagaaccatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACATTGCTGTACGCATCCGGAT 708 43 32 Antisense
GCATCCGGATTATTTCGTTTATTAC 10 309 47 Antisense
ATTACGGTAGCTTCGTTCTTTGCCA 165 11 67 Antisense
TATGCCTCGGAAATTGCTGTGCAGC 247 657 181 Antisense
GCTGTGCAGCCTTACATTATTCTTC 482 295 196 Antisense
AGCGTCAATGTTTTCTCCTAGGGAA 136 83 351 Antisense
TCCATCTGTCCCCTAATTTTTTTGG 175 591 416 Antisense
ATATATAACCGTCTCCTGGGCATTC 463 17 444 Antisense
GGCAGTGCTGTGCGATGCGATGTGC 315 535 491 Antisense
TGCGATGTGCGTACTTTCTGGGTAA 366 583 506 Antisense
GCAGAACCGTGAGCAGAACCATGTG 362 313 585 Antisense
Sequence Source Affymetrix Proprietary Database