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[177923_at]

Description R13H4.5 /REP_DB=WormBase Gene ID /WP=CE12808 /TR=P90951 /GB=CAB04657.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 66      6grp_total > 12      4grp_total > 12      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2030
1 2 3 4 range
A 1573.9
(-0.7)
P 		784.8
(-3)
P 		1101.3
(-2.1)
P 		2815.2
(3)
P 		2030
B 1146
(-2)
P 		1080.1
(-2.3)
P 		952.9
(-3)
P 		2067.5
(3)
P 		1115
C 1499.3
(-0.6)
P 		1610.5
(-0.2)
P 		956.6
(-3)
P 		2336.6
(3)
P 		1380
avr 1406.4
(-1.3) 		1158.5
(-2.3) 		1003.6
(-3) 		2406.4
(3) 		1403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 1097
(-3)
P 		1336.2
(1.5)
P 		1107.5
(-2.8)
P 		1418.9
(3)
P 		1232.4
(-0.5)
P 		1172.1
(-1.6)
P 		322
B 1532.5
(3)
P 		1531.8
(3)
P 		1309.7
(0.1)
P 		1467.6
(2.2)
P 		1218.6
(-1)
P 		1066
(-3)
P 		467
C 1390.9
(0.6)
P 		1402.1
(0.7)
P 		1406.6
(0.8)
P 		1602.6
(3)
P 		1293
(-0.5)
P 		1077.6
(-3)
P 		525
avr 1340.1
(0.6) 		1423.4
(1.9) 		1274.6
(-0.4) 		1496.4
(3) 		1248
(-0.8) 		1105.2
(-3) 		391
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 573
(3)
P 		170.4
(-3)
P 		287.9
(-1.2)
P 		412.1
(0.6)
P 		403
B 365.5
(0.9)
P 		266.8
(-1.7)
P 		220.8
(-3)
P 		440.6
(3)
P 		220
C 496.3
(3)
P 		463
(1.8)
P 		333.4
(-3)
P 		394
(-0.8)
P 		163
avr 478.3
(3) 		300.1
(-2.4) 		280.7
(-3) 		415.6
(1.1) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 202.2
(-3)
P 		475.2
(3)
P 		241.2
(-2.1)
P 		359.9
(0.5)
P 		371.9
(0.7)
P 		285.4
(-1.2)
P 		273
B 533.2
(3)
P 		509.9
(2.4)
P 		318
(-3)
P 		388.7
(-1)
P 		495.1
(1.9)
P 		397.5
(-0.8)
P 		215
C 515.5
(3)
P 		427.8
(0.3)
P 		358
(-1.9)
P 		322.3
(-3)
P 		418.4
(-0)
P 		360.7
(-1.8)
P 		193
avr 417
(1) 		471
(3) 		305.7
(-3) 		357
(-1.1) 		428.5
(1.5) 		347.9
(-1.5) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12711
Sequence Type Exemplar sequence
Representative Public ID R13H4.5 NCBI
Target Description R13H4.5 /REP_DB=WormBase Gene ID /WP=CE12808 /TR=P90951 /GB=CAB04657.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073585 NCBI Caenorhabditis elegans R13H4.5 (R13H4.5) mRNA, complete cds. 11/11 None
SNAP00000036684 ENSEMBL cdna:SNAP chromosome:CEL140:V:11863272:11864658:1 11/11 None
GENEFINDER00000036693 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11863272:11864658:1 11/11 None
R13H4.5.1 ENSEMBL cdna:known chromosome:CEL140:V:11863261:11864867:1 gene:R13H4.5 11/11 None
R13H4.5.2 ENSEMBL cdna:known chromosome:CEL140:V:11863263:11864819:1 gene:R13H4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11863271-11864658(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13H4.5
Entrez Gene 179625 Entrez gene
SwissProt P90951 EMBL-EBI
WormBase CE12808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04657 Hypothetical protein R13H4.5 [Caenorhabditis elegans] ref|NP_505986.1| R13H4.5 [Caenorhabditis elegans] 1.0E-176
blast CAE75280 Hypothetical protein CBG23246 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.5E-7
Sequence
Target Sequence 
>C. ELEGANS:177923_AT
cacacactgttacgcttgatgcctctctcgctgagctctgtgtagctgctcaatcaacaa
atgacattgcattctggtttgctttccaatcagcaagtggaacttctgatccagtatgtc
agtcgtcaaaggctccaagatgggtccctgatgatttccgtgtcagaagtgtacaatcat
atgagcaagatcagttgacagcctactcccaatggtctccaagaacacaagttattccag
ttggccccctgtttccaaaagcaaccgagataacaatccgtgcttcggttccacaacttc
gtcgtcttcgtcgttttcctgtctaccgtagccctcttcaccgttgctttatggatccaa
acaatcttcatattcttcgtctcgtcgtctctagtaacaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACACTGTTACGCTTGATGCCTC 383 195 473 Antisense
CTCGCTGAGCTCTGTGTAGCTGCTC 669 231 499 Antisense
GACATTGCATTCTGGTTTGCTTTCC 448 371 535 Antisense
GTATGTCAGTCGTCAAAGGCTCCAA 434 455 586 Antisense
AAAGGCTCCAAGATGGGTCCCTGAT 557 119 600 Antisense
GGTCCCTGATGATTTCCGTGTCAGA 101 503 615 Antisense
CAAGATCAGTTGACAGCCTACTCCC 151 185 658 Antisense
TAACAATCCGTGCTTCGGTTCCACA 67 639 743 Antisense
CCTCTTCACCGTTGCTTTATGGATC 693 267 805 Antisense
AACAATCTTCATATTCTTCGTCTCG 35 135 832 Antisense
GTCTCGTCGTCTCTAGTAACAATTC 699 467 851 Antisense
Sequence Source Affymetrix Proprietary Database