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[177922_at] 7TM chemoreceptor, srw family

Description C41G6.3 /REP_DB=WormBase Gene ID /WP=CE15701 /TR=O17656 /GB=CAB02828.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 04      6grp_cgc > 98      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 28.5
(-1.8)
A 		2.7
(-3)
A 		8.6
(-2.7)
A 		132.8
(3)
P 		130
B 50
(0.3)
A 		32.7
(-1)
A 		6.6
(-3)
A 		85.7
(3)
A 		79
C 35.1
(-2.2)
A 		27.3
(-2.5)
A 		11.4
(-3)
A 		186.7
(3)
P 		175
avr 37.9
(-1.6) 		20.9
(-2.4) 		8.9
(-3) 		135.1
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 25.9
(-0.5)
A 		4.9
(-3)
A 		8.9
(-2.5)
A 		6.4
(-2.8)
A 		54.7
(3)
A 		17.5
(-1.5)
A 		50
B 20.7
(-3)
A 		28
(-1.4)
A 		48.6
(3)
A 		37.2
(0.5)
A 		41.5
(1.5)
A 		23.6
(-2.4)
A 		28
C 14.6
(-3)
A 		71.5
(3)
P 		36.8
(-0.7)
A 		39.4
(-0.4)
A 		34.1
(-0.9)
A 		21.9
(-2.2)
A 		57
avr 20.4
(-3) 		34.8
(0.8) 		31.4
(-0.1) 		27.7
(-1.1) 		43.4
(3) 		21
(-2.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 10.4
(0.1)
A 		0.6
(-3)
A 		2.2
(-2.5)
A 		19.4
(3)
P 		19
B 16
(2.2)
A 		8.1
(-0.6)
A 		1.5
(-3)
A 		18.3
(3)
A 		17
C 11.6
(-1.3)
A 		7.8
(-2.2)
A 		4
(-3)
A 		31.5
(3)
P 		28
avr 12.7
(-0) 		5.5
(-2.2) 		2.6
(-3) 		23.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.8
(-1.7)
A 		1.8
(-2.9)
A 		1.9
(-2.9)
A 		1.6
(-3)
A 		16.5
(3)
A 		4.3
(-1.9)
A 		15
B 7.2
(-3)
A 		9.3
(-1.7)
A 		11.8
(-0.1)
A 		9.9
(-1.3)
A 		16.8
(3)
A 		8.8
(-2)
A 		10
C 5.4
(-3)
A 		21.8
(3)
P 		9.4
(-1.5)
A 		7.9
(-2.1)
A 		11
(-1)
A 		7.3
(-2.3)
A 		16
avr 5.8
(-3) 		11
(0.5) 		7.7
(-1.7) 		6.5
(-2.5) 		14.8
(3) 		6.8
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13520
Sequence Type Exemplar sequence
Representative Public ID C41G6.3 NCBI
Target Description C41G6.3 /REP_DB=WormBase Gene ID /WP=CE15701 /TR=O17656 /GB=CAB02828.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074365 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-15) (srw-15) mRNA, complete cds. 11/11 None
GENEFINDER00000010444 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15233129:15234479:1 11/11 None
C41G6.3 ENSEMBL cdna:known chromosome:CEL140:V:15233129:15234479:1 gene:C41G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010440 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15233128-15234479(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-15
Ensembl C41G6.3
Entrez Gene 183380 Entrez gene
SwissProt O17656 EMBL-EBI
WormBase CE15701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 0.0
blast CAB02833 Hypothetical protein C41G6.8 [Caenorhabditis elegans] ref|NP_506764.2| Serpentine Receptor, class W family member (srw-14) [Caenorhabditis elegans] 1.0E-147
blast CAB60284 Hypothetical protein C41G6.15 [Caenorhabditis elegans] ref|NP_506767.1| Serpentine Receptor, class W family member (srw-13) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506766.1 7 30-52,64-86,132-154,166-188,233-255,278-300,320-342
C41G6.3 7 30-52,64-86,132-154,166-188,233-255,278-300,320-342
GENEFINDER00000010444 7 30-52,64-86,132-154,166-188,233-255,278-300,320-342
Sequence
Target Sequence 
>C. ELEGANS:177922_AT
tttggacactctattcgacttggcaatttgcgttttatcgtgttttttggttaccagaca
acgctaatgaaatatgcaaatcaatgtttgaaagtttcataacacctcgatacgttcttg
ccacacctgtgaatcttccgaaactgatgagcacctggggttttattgaattcattgtga
acttctcttctgcaattatttatccgcttctcactatttcgctgttggttgcattactga
aaatcaagaaaagaaggcagaacaatcaaagaaaggagtcagaaccagctgataacacaa
ccaaattgatattatttatgacaatcacttttatgttatcagaggggttaagcggattta
atgcgttactaatgtataatattacaaagattcagagaaaatacctagagtttgaaaacg
cggtactcacttctgagttcccaatcgctgtcctcaaaacattcaatgcattttcccatt
ttttcgtttgttttttcctatcttcgcaatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGACACTCTATTCGACTTGGCA 74 665 539 Antisense
GGCAATTTGCGTTTTATCGTGTTTT 680 533 560 Antisense
TTTGGTTACCAGACAACGCTAATGA 529 639 584 Antisense
GTTTCATAACACCTCGATACGTTCT 34 451 632 Antisense
GTTCTTGCCACACCTGTGAATCTTC 126 445 652 Antisense
TCCGAAACTGATGAGCACCTGGGGT 669 593 675 Antisense
CTTCTCACTATTTCGCTGTTGGTTG 353 221 745 Antisense
TGAAAACGCGGTACTCACTTCTGAG 187 573 951 Antisense
TACTCACTTCTGAGTTCCCAATCGC 59 647 962 Antisense
CCCAATCGCTGTCCTCAAAACATTC 338 257 978 Antisense
TGTTTTTTCCTATCTTCGCAATATC 383 561 1027 Antisense
Sequence Source Affymetrix Proprietary Database