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[177921_at]

Description C44H4.4 /REP_DB=WormBase Gene ID /WP=CE28285 /TR=Q93376 /GB=CAB01868.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 12      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 476.8
(3)
P 		226
(-3)
P 		264.6
(-2.1)
P 		336.2
(-0.4)
P 		251
B 390.4
(3)
P 		274.6
(-2.4)
P 		302
(-1.1)
P 		262.5
(-3)
P 		128
C 515.3
(3)
P 		322.7
(-1.4)
P 		307.7
(-1.8)
P 		254.3
(-3)
P 		261
avr 460.8
(3) 		274.4
(-3) 		291.4
(-2.5) 		284.3
(-2.7) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 373
(1.1)
P 		435.1
(3)
P 		241.9
(-3)
P 		297.2
(-1.3)
P 		250.5
(-2.7)
P 		249.3
(-2.8)
P 		193
B 323.1
(2.9)
P 		325
(3)
P 		317.9
(2.5)
P 		261.7
(-1.2)
P 		241.9
(-2.4)
P 		233.5
(-3)
P 		92
C 328.3
(-0.8)
P 		409.6
(2.8)
P 		414.8
(3)
P 		276.9
(-3)
P 		281.2
(-2.8)
P 		294.3
(-2.2)
P 		138
avr 341.5
(0.8) 		389.9
(3) 		324.9
(0) 		278.6
(-2.1) 		257.9
(-3) 		259
(-3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 173.6
(3)
P 		49.1
(-3)
P 		69.2
(-2)
P 		49.2
(-3)
P 		125
B 124.5
(3)
P 		67.8
(-2)
P 		70
(-1.8)
P 		55.9
(-3)
P 		69
C 170.6
(3)
P 		92.8
(-0.7)
P 		107.2
(0)
P 		42.9
(-3)
P 		128
avr 156.2
(3) 		69.9
(-1.8) 		82.1
(-1.2) 		49.3
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 68.8
(-2.1)
P 		154.7
(3)
P 		52.7
(-3)
P 		75.4
(-1.7)
P 		75.6
(-1.7)
P 		60.7
(-2.5)
P 		102
B 112.4
(3)
P 		108.2
(2.4)
P 		77.2
(-1.9)
P 		69.3
(-3)
P 		98.3
(1)
P 		87.1
(-0.5)
P 		43
C 121.7
(2.7)
P 		125
(3)
P 		105.6
(1.3)
P 		55.7
(-3)
P 		91
(0.1)
P 		98.5
(0.7)
P 		69
avr 101
(0.3) 		129.3
(3) 		78.5
(-1.9) 		66.8
(-3) 		88.3
(-0.9) 		82.1
(-1.5) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17403
Sequence Type Exemplar sequence
Representative Public ID C44H4.4 NCBI
Target Description C44H4.4 /REP_DB=WormBase Gene ID /WP=CE28285 /TR=Q93376 /GB=CAB01868.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078026(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078026 NCBI Caenorhabditis elegans C44H4.4 (C44H4.4) mRNA, complete cds. 10/11 None
SNAP00000043716 ENSEMBL cdna:SNAP chromosome:CEL140:X:14581612:14589007:-1 10/11 None
GENEFINDER00000043723 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14584581:14589007:-1 10/11 None
C44H4.4 ENSEMBL cdna:known chromosome:CEL140:X:14584253:14589007:-1 gene:C44H4.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14585005-14589007(-) 99.29 100.0
Public Domain and Genome References
Gene Title
Ensembl C44H4.4
Entrez Gene 181552 Entrez gene
SwissProt Q93376 EMBL-EBI
WormBase CE28285 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2749.1.S1_S_AT similar to UHRF1-binding protein 1 (Ubiquitin-like containing PHD and RING finger domains 1-binding protein 1) (ICBP90-binding protein 1) cfa
CANINE_2:CFAAFFX.2752.1.S1_AT similar to UHRF1-binding protein 1 (Ubiquitin-like containing PHD and RING finger domains 1-binding protein 1) (ICBP90-binding protein 1) cfa
HG-U133_PLUS_2:233245_AT chromosome 6 open reading frame 107 hs
HG-U133B:233245_AT chromosome 6 open reading frame 107 hs
HU35KSUBA:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HU35KSUBB:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HU35KSUBC:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HU35KSUBD:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HUGENEFL:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HC-G110:HUM_ALU_AT chromosome 6 open reading frame 107 hs
HU35KSUBC:RC_AA400247_AT chromosome 6 open reading frame 107 hs
U133_X3P:HS2.347521.1.S1_3P_AT chromosome 6 open reading frame 107 hs
U133_X3P:HS.42173.0.S1_3P_AT chromosome 6 open reading frame 107 hs
U133_X3P:HS.283854.0.S1_3P_AT chromosome 6 open reading frame 107 hs
HG-U133_PLUS_2:1568789_AT chromosome 6 open reading frame 107 hs
HG-U133_PLUS_2:226135_AT chromosome 6 open reading frame 107 hs
HG-U133B:226135_AT chromosome 6 open reading frame 107 hs
HG-U95B:52042_AT chromosome 6 open reading frame 107 hs
HG-U95C:63454_AT Chromosome 6 open reading frame 107 hs
HG-U95D:75533_AT Chromosome 6 open reading frame 107 hs
MG-U74BV2:110118_AT RIKEN cDNA F830021D11 gene mm
MG-U74AV2:103773_AT RIKEN cDNA F830021D11 gene mm
MOE430A:1439482_AT RIKEN cDNA F830021D11 gene mm
MOUSE430A_2:1439482_AT RIKEN cDNA F830021D11 gene mm
MOUSE430_2:1439482_AT RIKEN cDNA F830021D11 gene mm
MU19KSUBC:TC38201_AT RIKEN cDNA F830021D11 gene mm
MG-U74BV2:111568_AT MKIAA4127 protein mm
MOUSE430_2:1444534_AT MKIAA4127 protein mm
MOE430B:1444534_AT MKIAA4127 protein mm
MU11KSUBA:AA274832_AT MKIAA4127 protein mm
MU19KSUBC:TC36241_AT MKIAA4127 protein mm
RAE230B:1395225_AT similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted) rn
RAT230_2:1395225_AT similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted) rn
RAE230B:1394938_AT similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted) rn
RAT230_2:1394938_AT similar to hypothetical protein FLJ20302; similar to CG31653-PA (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01868 Hypothetical protein C44H4.4 [Caenorhabditis elegans] ref|NP_510427.1| C44H4.4 [Caenorhabditis elegans] 0.0
blast CAE63202 Hypothetical protein CBG07557 [Caenorhabditis briggsae] 0.0
blast CAI21368 novel protein [Danio rerio] 3.0E-77
blast CAI21368 novel protein [Danio rerio] 4.0E-77
Sequence
Target Sequence 
>C. ELEGANS:177921_AT
tggtgctgttatgttgctcatgctctttcatcagctattgaagacggaaatcttattcct
gaaaatgagctggacattcaaccaccaactatcaaagtcaatttggtaatgccaaggctt
gtccttaacctgccaggaccattcacagatttcaacttccctcgaagacttgttacgtct
atgtcaacactctctatctcatcaagtcaaatcgacttcaaagagaacagcagattccgc
attctgtctgagagcacagatgagcatagtgatgtgaaaaatcaattgataaatggactc
aacaaatttcatatttgcacatcaccagtttggattgaaattgatcatggaccacagacc
aaaggatttccgtttttgcacgatgtgtcatttaatggcattttggcaattgataaagat
aaagtgaatgtcttggtggagccagcagaggatgttgccgtagtggtcgaccattaccag
tttctgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGCTGTTATGTTGCTCATGCTC 334 553 1516 Antisense
TGAGCTGGACATTCAACCACCAACT 110 569 1581 Antisense
AATGCCAAGGCTTGTCCTTAACCTG 565 147 1623 Antisense
ACCTGCCAGGACCATTCACAGATTT 110 89 1643 Antisense
GATTTCAACTTCCCTCGAAGACTTG 192 429 1663 Antisense
GTTACGTCTATGTCAACACTCTCTA 579 445 1687 Antisense
AACACTCTCTATCTCATCAAGTCAA 88 137 1701 Antisense
ATTCCGCATTCTGTCTGAGAGCACA 442 7 1749 Antisense
GATTTCCGTTTTTGCACGATGTGTC 681 427 1880 Antisense
GAGGATGTTGCCGTAGTGGTCGACC 323 403 1963 Antisense
GTCGACCATTACCAGTTTCTGCAGG 439 473 1981 Antisense
Sequence Source Affymetrix Proprietary Database