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[177920_at]

Description D1086.3 /REP_DB=WormBase Gene ID /WP=CE09061 /TR=O17725 /GB=CAB04018.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      6grp_highest_nonorm > 43      6grp_total > 62      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 79.6
(-1.6)
A 		196.8
(0.5)
P 		330.1
(3)
P 		5.4
(-3)
A 		325
B 82.1
(-1.6)
A 		201.7
(0.5)
P 		341.3
(3)
P 		4.4
(-3)
A 		337
C 88.8
(-1.7)
P 		143.6
(-0.8)
P 		386.8
(3)
P 		7.4
(-3)
A 		379
avr 83.5
(-1.7) 		180.7
(0) 		352.7
(3) 		5.7
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2299
1 2 3 4 5 6 range
A 198.7
(-2.7)
P 		341.9
(-2.3)
P 		2202.6
(3)
P 		1864
(2)
P 		625.6
(-1.5)
P 		98.9
(-3)
P 		2104
B 217.3
(-2.7)
P 		340.9
(-2.4)
P 		2392.5
(3)
P 		1612.9
(1)
P 		724.6
(-1.4)
P 		101.5
(-3)
P 		2291
C 239.9
(-2.6)
P 		372.6
(-2.2)
P 		2248.6
(3)
P 		1718
(1.5)
P 		699.4
(-1.3)
P 		93.6
(-3)
P 		2155
avr 218.6
(-2.7) 		351.8
(-2.3) 		2281.2
(3) 		1731.6
(1.5) 		683.2
(-1.4) 		98
(-3) 		2183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 29
(-1)
A 		42.7
(-0.1)
P 		86.3
(3)
P 		0.8
(-3)
A 		86
B 26.2
(-1.1)
A 		49.8
(0.8)
P 		79.1
(3)
P 		0.9
(-3)
A 		78
C 29.4
(-1.7)
P 		41.3
(-1.2)
P 		134.8
(3)
P 		1.3
(-3)
A 		134
avr 28.2
(-1.4) 		44.6
(-0.4) 		100.1
(3) 		1
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 36.6
(-2.8)
P 		121.6
(-1.7)
P 		479.7
(3)
P 		472.8
(2.9)
P 		188.8
(-0.8)
P 		24.1
(-3)
P 		456
B 75.6
(-2.6)
P 		113.5
(-2.2)
P 		581
(3)
P 		427.2
(1.3)
P 		294.4
(-0.2)
P 		37.8
(-3)
P 		543
C 88.9
(-2.4)
P 		113.7
(-2.1)
P 		572.3
(3)
P 		345.5
(0.5)
P 		226.3
(-0.8)
P 		31.3
(-3)
P 		541
avr 67
(-2.6) 		116.3
(-2) 		544.3
(3) 		415.2
(1.5) 		236.5
(-0.6) 		31.1
(-3) 		513
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12681
Sequence Type Exemplar sequence
Representative Public ID D1086.3 NCBI
Target Description D1086.3 /REP_DB=WormBase Gene ID /WP=CE09061 /TR=O17725 /GB=CAB04018.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074095 NCBI Caenorhabditis elegans D1086.3 (D1086.3) mRNA, complete cds. 11/11 None
SNAP00000017537 ENSEMBL cdna:SNAP chromosome:CEL140:V:14095471:14096401:1 11/11 None
GENEFINDER00000017543 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14095471:14096401:1 11/11 None
D1086.3 ENSEMBL cdna:known chromosome:CEL140:V:14095471:14096510:1 gene:D1086.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14095470-14096401(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.3
Entrez Gene 179907 Entrez gene
SwissProt O17725 EMBL-EBI
WormBase CE09061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04018 Hypothetical protein D1086.3 [Caenorhabditis elegans] ref|NP_506496.1| D1086.3 [Caenorhabditis elegans] 5.0E-98
blast CAE60987 Hypothetical protein CBG04723 [Caenorhabditis briggsae] 4.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.4E-50
Sequence
Target Sequence 
>C. ELEGANS:177920_AT
tcagttttcttagtttgttccgcgttggctgccagttctgataaggatactgaatcaaaa
gtggccagatatttgaaatcctgtggagttatcacttcattgaagactactaaatgtgtt
aagagaagcgatgaagtagataaggagctcaaagctctcgtaaagagcaaagacaaggat
ctctcaaaagtcaaggcttcgtgcaaagacaccatggaatgcattaaagagctgaaatgt
aaaccactcgaagaagatcacaaggagactctcgacttctgtggtcgtgctcttttccag
gacgagttcaaggattgcagcaagaaattgcaggcattgaagaaaagtgataaggatgct
gcaaagtgtttggaagattttaaatcagagacaaagaagtcgacaaaggacacttgcaca
tttttgaagggctcgaaagattgtatcaaggctcatattaagaaagagtgcggggatgat
aagttgcagggatggcagaagtttgctcaagactcgttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTTTTCTTAGTTTGTTCCGCGT 225 623 34 Antisense
GCGTTGGCTGCCAGTTCTGATAAGG 13 291 55 Antisense
AATCCTGTGGAGTTATCACTTCATT 689 167 110 Antisense
AAGGCTTCGTGCAAAGACACCATGG 396 161 226 Antisense
GAAGATCACAAGGAGACTCTCGACT 420 337 286 Antisense
AGACTCTCGACTTCTGTGGTCGTGC 609 71 299 Antisense
CGTGCTCTTTTCCAGGACGAGTTCA 662 243 319 Antisense
AGTCGACAAAGGACACTTGCACATT 405 61 431 Antisense
CACTTGCACATTTTTGAAGGGCTCG 305 197 444 Antisense
GGGGATGATAAGTTGCAGGGATGGC 392 497 505 Antisense
GAAGTTTGCTCAAGACTCGTTCAAA 652 335 531 Antisense
Sequence Source Affymetrix Proprietary Database