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[177919_s_at]

Description C01F6.1 /REP_DB=WormBase Gene ID /WP=CE02950 /TR=Q17559 /GB=CAA92434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 92      6grp_total > 68      4grp_total > 06      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 274.1
(1)
P 		180.7
(-3)
P 		251.5
(0)
P 		320.1
(3)
P 		139
B 294.5
(3)
P 		202.6
(-2.3)
P 		190.6
(-3)
P 		249.8
(0.4)
P 		104
C 240.6
(-2.3)
P 		233.3
(-3)
P 		234.1
(-2.9)
P 		295.8
(3)
P 		63
avr 269.7
(1.6) 		205.5
(-3) 		225.4
(-1.6) 		288.6
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 277.6
(-0.8)
P 		241.5
(-2.2)
P 		279.7
(-0.7)
P 		222.2
(-3)
P 		274.9
(-0.9)
P 		370.8
(3)
P 		149
B 269.3
(-0.7)
P 		201.1
(-3)
P 		267.6
(-0.7)
P 		278.2
(-0.3)
P 		238.6
(-1.7)
P 		375.5
(3)
P 		174
C 241.7
(-1.8)
P 		182.7
(-3)
P 		198
(-2.7)
P 		303.4
(-0.5)
P 		255.8
(-1.5)
P 		475.9
(3)
P 		293
avr 262.9
(-1.4) 		208.4
(-3) 		248.4
(-1.8) 		267.9
(-1.2) 		256.4
(-1.6) 		407.4
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 99.8
(3)
P 		39.2
(-3)
P 		65.7
(-0.4)
P 		46.9
(-2.2)
P 		61
B 93.9
(3)
P 		50
(-2.3)
P 		44.2
(-3)
P 		53.2
(-1.9)
P 		50
C 79.6
(2.6)
P 		67.1
(0.3)
P 		81.6
(3)
P 		49.9
(-3)
P 		32
avr 91.1
(3) 		52.1
(-2.7) 		63.8
(-1) 		50
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 51.2
(-3)
P 		85.9
(2.3)
P 		60.9
(-1.5)
P 		56.4
(-2.2)
P 		82.9
(1.9)
P 		90.3
(3)
P 		39
B 93.7
(-0.7)
P 		66.9
(-2.8)
P 		65
(-3)
P 		73.7
(-2.3)
P 		96.9
(-0.4)
P 		140
(3)
P 		75
C 89.6
(-0.8)
P 		55.7
(-2.7)
P 		50.4
(-3)
P 		61
(-2.4)
P 		82.8
(-1.2)
P 		159.3
(3)
P 		109
avr 78.2
(-1.4) 		69.5
(-2.1) 		58.8
(-3) 		63.7
(-2.6) 		87.5
(-0.6) 		129.9
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9175
Sequence Type Exemplar sequence
Representative Public ID C01F6.1 NCBI
Target Description C01F6.1 /REP_DB=WormBase Gene ID /WP=CE02950 /TR=Q17559 /GB=CAA92434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069183 NCBI Caenorhabditis elegans C01F6.1 (C01F6.1) mRNA, complete cds. 11/11 None
SNAP00000031436 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9096910:9099054:1 11/11 None
GENEFINDER00000031445 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9096910:9099054:1 11/11 None
C01F6.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:9096820:9099342:1 gene:C01F6.1 11/11 None
C01F6.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:9096822:9100509:1 gene:C01F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9096915-9099060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F6.1
Entrez Gene 3565393 Entrez gene
SwissProt Q17559 EMBL-EBI
WormBase CE02950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92434 Hypothetical protein C01F6.1 [Caenorhabditis elegans] ref|NP_501584.1| C01F6.1 [Caenorhabditis elegans] 0.0
blast CAE74108 Hypothetical protein CBG21768 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010734 EMBL-EBI Copine 5.5E-67
Pfam IPR010734 EMBL-EBI Copine 5.5E-67
Sequence
Target Sequence 
>C. ELEGANS:177919_S_AT
tcttgcttatcttccaaatcctcagaatcctcatattggagctcttgggttcggtgcaaa
agttcaagttcctggaggtgctcttcagttatcacactgtttttgtttaaatggaactcc
aactgatccacgtgtagaaggtttgggaggactgctaagtgcttatagaactgcagttat
gggtcttcaaccatttgcaccaacagatttttcagaagttatttattttatgtcaaaatt
cgcaaaagctgaatctcgtcgtcatgttggtctctacttcgttctaatcatctattcaga
tggtggccctgccaatgcacttaacatgaaaagatcaattgatgcaatagttgatgcatc
gcctcatccaatgagtattatcggagttggaatgggacaggatcgagatcacagtccgat
gcgaaatcttgagaaactgacattgaaacattccgacggacggcttctcgtgcgacagaa
ctatagctacgtagatccgtcggaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCTTATCTTCCAAATCCTCAG 148 619 966 Antisense
TATTGGAGCTCTTGGGTTCGGTGCA 237 665 999 Antisense
AAGTTCCTGGAGGTGCTCTTCAGTT 158 157 1031 Antisense
AACTCCAACTGATCCACGTGTAGAA 142 141 1080 Antisense
GGTCTTCAACCATTTGCACCAACAG 336 503 1147 Antisense
TGAATCTCGTCGTCATGTTGGTCTC 357 575 1215 Antisense
GTCTCTACTTCGTTCTAATCATCTA 594 469 1235 Antisense
CTATTCAGATGGTGGCCCTGCCAAT 431 219 1257 Antisense
TAGTTGATGCATCGCCTCATCCAAT 279 645 1313 Antisense
GAAACATTCCGACGGACGGCTTCTC 289 357 1410 Antisense
TAGCTACGTAGATCCGTCGGACCTA 574 649 1449 Antisense
Sequence Source Affymetrix Proprietary Database