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[177918_at]

Description K02B9.3 /REP_DB=WormBase Gene ID /WP=CE06060 /TR=Q21125 /GB=CAA93508.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.5
(-3)
A 		7.4
(-0.2)
A 		6.8
(-0.6)
A 		11.9
(3)
A 		8
B 3.3
(-2.5)
A 		2.8
(-3)
A 		3.2
(-2.6)
A 		8.5
(3)
A 		6
C 3.3
(-3)
A 		4.4
(-2.4)
A 		4.5
(-2.4)
A 		14.9
(3)
A 		12
avr 3.4
(-3) 		4.9
(-1.9) 		4.8
(-2) 		11.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.5
(-2.7)
A 		5.2
(0.2)
A 		3.3
(-3)
A 		6.9
(3)
A 		5.5
(0.7)
A 		5
(-0.2)
A 		4
B 3
(-3)
A 		4.7
(0.1)
A 		5.3
(1.2)
A 		6.3
(3)
A 		4.7
(0.1)
A 		3.9
(-1.4)
A 		3
C 6.4
(2)
A 		3.8
(-3)
A 		6.9
(3)
A 		4.6
(-1.5)
A 		5.7
(0.7)
A 		3.8
(-3)
A 		3
avr 4.3
(-2.6) 		4.6
(-1.6) 		5.2
(0.5) 		5.9
(3) 		5.3
(0.9) 		4.2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-3)
A 		1.6
(0.6)
A 		1.8
(3)
A 		1.7
(1.8)
A 		1
B 1.1
(-0.8)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.8
(3)
A 		1
C 1.1
(-3)
A 		1.3
(-2.1)
A 		1.6
(-0.9)
A 		2.5
(3)
A 		1
avr 1.2
(-3) 		1.2
(-3) 		1.4
(-1.5) 		2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.9
(3)
A 		0.7
(-2.5)
A 		1.8
(2.5)
A 		1.7
(2.1)
A 		1.2
(-0.2)
A 		1
B 1.1
(-3)
A 		1.6
(0.8)
A 		1.3
(-1.5)
A 		1.7
(1.5)
A 		1.9
(3)
A 		1.5
(0)
A 		1
C 2.4
(3)
A 		1.2
(-1.8)
A 		1.8
(0.6)
A 		0.9
(-3)
A 		1.8
(0.6)
A 		1.3
(-1.4)
A 		2
avr 1.4
(-1.8) 		1.6
(0.6) 		1.3
(-3) 		1.5
(-0.6) 		1.8
(3) 		1.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17667
Sequence Type Exemplar sequence
Representative Public ID K02B9.3 NCBI
Target Description K02B9.3 /REP_DB=WormBase Gene ID /WP=CE06060 /TR=Q21125 /GB=CAA93508.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077919 NCBI Caenorhabditis elegans K02B9.3 (K02B9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000032420 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13930819:13931954:1 11/11 None
K02B9.3 ENSEMBL cdna:known chromosome:CEL140:X:13930819:13931954:1 gene:K02B9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032413 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13930818-13931954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B9.3
Entrez Gene 186867 Entrez gene
SwissProt Q21125 EMBL-EBI
WormBase CE06060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93508 Hypothetical protein K02B9.3 [Caenorhabditis elegans] ref|NP_510320.1| K02B9.3 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510320.1 6 7-29,44-66,93-115,135-157,170-192,233-255
K02B9.3 6 7-29,44-66,93-115,135-157,170-192,233-255
GENEFINDER00000032420 6 7-29,44-66,93-115,135-157,170-192,233-255
Sequence
Target Sequence 
>C. ELEGANS:177918_AT
tttccatgcgatttcaactcttcaaatcatcgtcatatcgttcatgatcttcatgcgatt
gaaagctaaatacgatcgtgttcctgtagtttccgactaccgaatcctgcagataatggt
tgtattttcagttgcgtctgcatctccactacttttttcaccagtggagttcgagcttgt
ttgggaccaattctactttgtcaccagtaaaactccgatctccgtgattcctcctatcat
catctgcaccctgttcttcaatctgattttgcaaattttaataactgacagtctcatctt
ttcagaaacaccttggtttgtttgtggcgtcggtgtctttgttgtcaacatggcccttct
agaactagaccactatctcgacataagcctagttgccgattttgagttcgttgttttccc
gttgaccactgcctgcttctctttttgtgtgccggcaagtagaatcatcccattcaaaga
gagccgctccgaaatgtggaaacttctctggggctacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATGCGATTTCAACTCTTCAA 471 669 303 Antisense
CGATCGTGTTCCTGTAGTTTCCGAC 375 225 375 Antisense
TCCGACTACCGAATCCTGCAGATAA 404 595 394 Antisense
TATTTTCAGTTGCGTCTGCATCTCC 338 663 425 Antisense
GTGGAGTTCGAGCTTGTTTGGGACC 276 489 466 Antisense
TGGGACCAATTCTACTTTGTCACCA 388 553 484 Antisense
AGTAAAACTCCGATCTCCGTGATTC 42 63 508 Antisense
GTTGTCAACATGGCCCTTCTAGAAC 683 435 643 Antisense
GACCACTATCTCGACATAAGCCTAG 683 381 670 Antisense
GTGCCGGCAAGTAGAATCATCCCAT 643 477 751 Antisense
ATGTGGAAACTTCTCTGGGGCTACG 269 31 796 Antisense
Sequence Source Affymetrix Proprietary Database