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[177917_at]

Description C02D4.1 /REP_DB=WormBase Gene ID /WP=CE07836 /TR=O02212 /GB=CAB02717.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 4.7
(-3)
A 		367.6
(3)
P 		299.4
(1.9)
P 		3
(-3)
A 		365
B 49.8
(-2.6)
A 		328.8
(3)
P 		252.2
(1.5)
P 		27.6
(-3)
A 		301
C 26.3
(-2.6)
A 		350.4
(3)
P 		330.5
(2.7)
P 		5.5
(-3)
A 		345
avr 26.9
(-2.7) 		348.9
(3) 		294
(2) 		12
(-3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 76.7
(-3)
A 		260.6
(2.7)
P 		212.8
(1.3)
P 		268.6
(3)
P 		182
(0.3)
P 		161.2
(-0.4)
A 		192
B 109.7
(-3)
A 		255.3
(3)
P 		251
(2.8)
P 		173.1
(-0.4)
P 		225.4
(1.8)
P 		138.2
(-1.8)
P 		146
C 95.9
(-3)
A 		304.7
(3)
P 		186.1
(-0.4)
P 		230.9
(0.9)
P 		224.1
(0.7)
P 		165
(-1)
P 		209
avr 94.1
(-3) 		273.5
(3) 		216.6
(1.1) 		224.2
(1.4) 		210.5
(0.9) 		154.8
(-1) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 1.7
(-2.9)
A 		79.8
(3)
P 		78.3
(2.9)
P 		0.4
(-3)
A 		79
B 15.9
(-2.2)
A 		81.2
(3)
P 		58.4
(1.2)
P 		5.9
(-3)
A 		75
C 8.7
(-2.6)
A 		100.7
(2.2)
P 		115.2
(3)
P 		0.9
(-3)
A 		114
avr 8.8
(-2.5) 		87.2
(3) 		84
(2.8) 		2.4
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 14.1
(-3)
A 		92.7
(3)
P 		46.3
(-0.5)
P 		68.1
(1.1)
P 		54.9
(0.1)
P 		39.2
(-1.1)
A 		79
B 38.2
(-3)
A 		85
(2.3)
P 		61
(-0.4)
P 		45.8
(-2.1)
P 		91.6
(3)
P 		51.5
(-1.5)
P 		53
C 35.5
(-3)
A 		93
(3)
P 		47.4
(-1.8)
P 		46.4
(-1.9)
P 		72.5
(0.9)
P 		55.2
(-0.9)
P 		58
avr 29.3
(-3) 		90.2
(3) 		51.6
(-0.8) 		53.4
(-0.6) 		73
(1.3) 		48.6
(-1.1) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17440
Sequence Type Exemplar sequence
Representative Public ID C02D4.1 NCBI
Target Description C02D4.1 /REP_DB=WormBase Gene ID /WP=CE07836 /TR=O02212 /GB=CAB02717.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078133 NCBI Caenorhabditis elegans C02D4.1 (C02D4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038274 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15284237:15286201:1 11/11 None
SNAP00000038268 ENSEMBL cdna:SNAP chromosome:CEL140:X:15284418:15286144:1 9/11 None
C02D4.1 ENSEMBL cdna:known chromosome:CEL140:X:15284629:15285571:1 gene:C02D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15284628-15285571(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02D4.1
Entrez Gene 182109 Entrez gene
SwissProt Q6LA91 EMBL-EBI
WormBase CE07836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02717 Hypothetical protein C02D4.1 [Caenorhabditis elegans] ref|NP_510534.1| C02D4.1 [Caenorhabditis elegans] pir||T18862 hypothetical protein C02D4.1 - Caenorhabditis elegans 1.0E-142
blast CAE63294 Hypothetical protein CBG07676 [Caenorhabditis briggsae] 1.0E-119
blast CAB02717 Hypothetical protein C02D4.1 [Caenorhabditis elegans] ref|NP_510534.1| C02D4.1 [Caenorhabditis elegans] pir||T18862 hypothetical protein C02D4.1 - Caenorhabditis elegans 4.0E-91
blast CAE63294 Hypothetical protein CBG07676 [Caenorhabditis briggsae] 4.0E-84
blast CAE63294 Hypothetical protein CBG07676 [Caenorhabditis briggsae] 7.0E-77
blast CAB02717 Hypothetical protein C02D4.1 [Caenorhabditis elegans] ref|NP_510534.1| C02D4.1 [Caenorhabditis elegans] pir||T18862 hypothetical protein C02D4.1 - Caenorhabditis elegans 3.0E-76
Sequence
Target Sequence 
>C. ELEGANS:177917_AT
gtggctggaacaccttgcctaaaagaaatagcaattgaaaatgatattttggatgtcatc
aagagtttcgaagctgattcatcgtcaaatagtgatcgagcagagccggcgtctacaacc
tcaggagcttccagtgatccggattatgatcacatcgggacaaacgggggtacaccaatc
ccgcttctttccgccaccacgttctcaagcccaactaaaaagtatagaagttcagctgac
actgatagtgatgattatctagatcagacaacattcgatgacgtcgctatgatgcaattc
gacagtgtgcaggcgccgtttcttcgttccgcgagtccttatgtgaaaagtgaatttcaa
aaaatatgggaagatcagaacattccgagtgaaagcttgagaactttgaagattcaaact
ttagcggtttctttattgacatctaaacagttgacagagtataatcgctgggcaaccaaa
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTGGAACACCTTGCCTAAAAG 643 489 148 Antisense
GTTTCGAAGCTGATTCATCGTCAAA 688 449 212 Antisense
AATAGTGATCGAGCAGAGCCGGCGT 427 169 235 Antisense
TCTACAACCTCAGGAGCTTCCAGTG 708 613 259 Antisense
GGAGCTTCCAGTGATCCGGATTATG 615 517 271 Antisense
CACGTTCTCAAGCCCAACTAAAAAG 412 199 345 Antisense
GATGACGTCGCTATGATGCAATTCG 369 411 424 Antisense
GCAATTCGACAGTGTGCAGGCGCCG 343 323 441 Antisense
TCGTTCCGCGAGTCCTTATGTGAAA 485 603 471 Antisense
TTTAGCGGTTTCTTTATTGACATCT 548 671 567 Antisense
GTATAATCGCTGGGCAACCAAACGA 653 451 606 Antisense
Sequence Source Affymetrix Proprietary Database