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[177916_at]

Description W04G3.3 /REP_DB=WormBase Gene ID /WP=CE03787 /TR=Q23164 /GB=CAA92025.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      6grp_highest_nonorm > 45      6grp_total > 91      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5608
1 2 3 4 range
A 49.3
(-3)
A 		4549.3
(3)
P 		4575.5
(3)
P 		54.3
(-3)
A 		4526
B 54.2
(-2.9)
A 		5612.6
(3)
P 		4371.1
(1.7)
P 		4.5
(-3)
A 		5608
C 28.2
(-3)
A 		4683.3
(3)
P 		4488.5
(2.7)
P 		75.9
(-2.9)
A 		4655
avr 43.9
(-3) 		4948.4
(3) 		4478.4
(2.4) 		44.9
(-3) 		4905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2853
1 2 3 4 5 6 range
A 2369.5
(0.7)
P 		2409.6
(0.8)
P 		1826.7
(-0.5)
P 		3376.6
(3)
P 		2260.5
(0.5)
P 		744.1
(-3)
P 		2633
B 2400.1
(0.6)
P 		2349.2
(0.5)
P 		2028.5
(-0.1)
P 		3525.9
(3)
P 		1930.8
(-0.4)
P 		672.8
(-3)
P 		2853
C 2498.3
(1.4)
P 		2264.9
(0.8)
P 		2360.3
(1)
P 		3165.5
(3)
P 		2189.1
(0.6)
P 		736.1
(-3)
P 		2429
avr 2422.6
(0.9) 		2341.2
(0.7) 		2071.8
(0.1) 		3356
(3) 		2126.8
(0.2) 		717.7
(-3) 		2638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1564
1 2 3 4 range
A 18
(-2.9)
A 		987.5
(1.9)
P 		1196.1
(3)
P 		8
(-3)
A 		1188
B 17.3
(-2.9)
A 		1386.2
(3)
P 		1012.9
(1.4)
P 		0.9
(-3)
A 		1385
C 9.3
(-3)
A 		1346.5
(2.2)
P 		1564.4
(3)
P 		12.8
(-3)
A 		1555
avr 14.9
(-3) 		1240.1
(2.9) 		1257.8
(3) 		7.2
(-3) 		1251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 753
1 2 3 4 5 6 range
A 436.8
(-0.7)
P 		857
(3)
P 		397.8
(-1.1)
P 		856.4
(3)
P 		682.1
(1.4)
P 		181.2
(-3)
P 		676
B 835.1
(2.1)
P 		781.9
(1.7)
P 		492.6
(-0.9)
P 		933.9
(3)
P 		784.5
(1.7)
P 		250.9
(-3)
P 		683
C 926
(3)
P 		691.1
(0.9)
P 		600.7
(0.1)
P 		636.6
(0.4)
P 		708.4
(1.1)
P 		246.4
(-3)
P 		680
avr 732.6
(2.2) 		776.7
(2.7) 		497
(-0.2) 		809
(3) 		725
(2.1) 		226.2
(-3) 		583
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16568
Sequence Type Exemplar sequence
Representative Public ID W04G3.3 NCBI
Target Description W04G3.3 /REP_DB=WormBase Gene ID /WP=CE03787 /TR=Q23164 /GB=CAA92025.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077451 NCBI Caenorhabditis elegans W04G3.3 (W04G3.3) mRNA, complete cds. 11/11 None
SNAP00000042822 ENSEMBL cdna:SNAP chromosome:CEL140:X:11065110:11066482:1 11/11 None
GENEFINDER00000042835 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11065110:11066482:1 11/11 None
W04G3.3 ENSEMBL cdna:known chromosome:CEL140:X:11065093:11066730:1 gene:W04G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11065109-11066482(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.3
Entrez Gene 181298 Entrez gene
SwissProt Q23164 EMBL-EBI
WormBase CE31627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92025 Hypothetical protein W04G3.3 [Caenorhabditis elegans] ref|NP_509852.2| W04G3.3 [Caenorhabditis elegans] 0.0
blast CAE70757 Hypothetical protein CBG17506 [Caenorhabditis briggsae] 0.0
blast CAE70760 Hypothetical protein CBG17509 [Caenorhabditis briggsae] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:177916_AT
ggacgcaccagttattccaggagtcaacactattccaggacttagcaattttaactacct
tgtcggacaacttttcccacaaatgattccaccagcaaacactcttctaggatcttcaat
cagcagaattcttccaaaggatactgcaaaaaatatcgcaaaggatgtgttcagagctgt
tcacccaactgctgaaaatgtagataccgctagaatgatgggaagatggttccaagttat
caactctccacatgtcatccgtgaggcctgcaccgtgtcacacttcggagcccttacgaa
caacacatactctgcttccttcaccatcctcaagttctacagagaaggaaatccaaatgg
atccccaagatatgctctcggatacggattcaaatctggagaaactggacaattcgttct
tcacaactccaattctgctgatgccgagcctttctttgtcattgctcgtgacccagaacg
cttcagaaagctgcacatgaagaatgtcctcgaattcttgcaacagaacaactacatcaa
cgtcatgaccaaggccttcaacatgatctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCACCAGTTATTCCAGGAGTC 400 523 387 Antisense
TTGTCGGACAACTTTTCCCACAAAT 100 701 446 Antisense
CCACCAGCAAACACTCTTCTAGGAT 499 273 475 Antisense
GGATGTGTTCAGAGCTGTTCACCCA 675 513 549 Antisense
ACGAACAACACATACTCTGCTTCCT 74 93 682 Antisense
CTTCACCATCCTCAAGTTCTACAGA 638 221 705 Antisense
TGGATCCCCAAGATATGCTCTCGGA 44 551 744 Antisense
CAATTCGTTCTTCACAACTCCAATT 598 179 796 Antisense
AACTCCAATTCTGCTGATGCCGAGC 356 141 811 Antisense
GAGCCTTTCTTTGTCATTGCTCGTG 149 385 832 Antisense
GACCAAGGCCTTCAACATGATCTCT 642 383 933 Antisense
Sequence Source Affymetrix Proprietary Database