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[177914_s_at]

Description K05C4.2 /REP_DB=WormBase Gene ID /WP=CE19970 /TR=Q9XUU9 /GB=CAB04568.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 46      6grp_total > 50      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9005
1 2 3 4 range
A 2649.8
(-3)
P 		3986.4
(-2.1)
P 		4587.3
(-1.7)
P 		11655.2
(3)
P 		9005
B 3656.6
(-3)
P 		3951.7
(-2.7)
P 		4753.2
(-1.8)
P 		9256.7
(3)
P 		5600
C 2957.8
(-3)
P 		3933.1
(-2.3)
P 		3953
(-2.2)
P 		10858.5
(3)
P 		7901
avr 3088.1
(-3) 		3957.1
(-2.3) 		4431.2
(-1.9) 		10590.1
(3) 		7502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2160
1 2 3 4 5 6 range
A 4173.2
(3)
P 		2393.5
(-3)
P 		3558.5
(0.9)
P 		3031.2
(-0.8)
P 		2393.3
(-3)
P 		2918.2
(-1.2)
P 		1780
B 2665
(-1.6)
P 		3353.6
(1.3)
P 		2674.7
(-1.5)
P 		3773.7
(3)
P 		2312.3
(-3)
P 		2732.6
(-1.3)
P 		1461
C 2364.2
(-1)
P 		2659.3
(0.6)
P 		3086.4
(3)
P 		2555.2
(0)
P 		2013.4
(-3)
P 		2391
(-0.9)
P 		1073
avr 3067.5
(2.6) 		2802.1
(0.8) 		3106.5
(2.9) 		3120
(3) 		2239.7
(-3) 		2680.6
(0) 		880
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1107
1 2 3 4 range
A 964.8
(-2.3)
P 		865.3
(-3)
P 		1199.2
(-0.6)
P 		1706.1
(3)
P 		841
B 1166.1
(-1.9)
P 		976
(-3)
P 		1101.4
(-2.2)
P 		1972.6
(3)
P 		997
C 979.1
(-3)
P 		1130.8
(-1.9)
P 		1377.7
(-0.2)
P 		1830.9
(3)
P 		852
avr 1036.7
(-2.7) 		990.7
(-3) 		1226.1
(-1.3) 		1836.5
(3) 		846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 769.3
(-0.5)
P 		851.2
(3)
P 		775
(-0.2)
P 		768.8
(-0.5)
P 		722.2
(-2.5)
P 		710.5
(-3)
P 		141
B 927.3
(0.6)
P 		1116.3
(3)
P 		649.5
(-3)
P 		999.5
(1.5)
P 		939.5
(0.7)
P 		1019
(1.7)
P 		467
C 876.3
(3)
P 		811.4
(1.9)
P 		785.5
(1.5)
P 		513.9
(-3)
P 		651.5
(-0.7)
P 		800.4
(1.7)
P 		362
avr 857.6
(0.8) 		926.3
(3) 		736.7
(-3) 		760.7
(-2.2) 		771.1
(-1.9) 		843.3
(0.4) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1761
Sequence Type Exemplar sequence
Representative Public ID K05C4.2 NCBI
Target Description K05C4.2 /REP_DB=WormBase Gene ID /WP=CE19970 /TR=Q9XUU9 /GB=CAB04568.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061158 NCBI Caenorhabditis elegans K05C4.2 (K05C4.2) mRNA, complete cds. 11/11 None
SNAP00000018535 ENSEMBL cdna:SNAP chromosome:CEL140:I:14728839:14732849:-1 11/11 None
GENEFINDER00000018546 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14728839:14732849:-1 11/11 None
K05C4.2.2 ENSEMBL cdna:known chromosome:CEL140:I:14728706:14729479:-1 gene:K05C4.2 11/11 None
K05C4.2.1 ENSEMBL cdna:known chromosome:CEL140:I:14728706:14729473:-1 gene:K05C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14728769-14729388(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.2
Entrez Gene 173335 Entrez gene
SwissProt Q9XUU9 EMBL-EBI
WormBase CE19970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04576 Hypothetical protein K05C4.11 [Caenorhabditis elegans] ref|NP_493560.1| K05C4.11 [Caenorhabditis elegans] 0.0
blast CAE72559 Hypothetical protein CBG19743 [Caenorhabditis briggsae] 1.0E-152
blast CAB04568 Hypothetical protein K05C4.2 [Caenorhabditis elegans] ref|NP_493559.1| K05C4.2 [Caenorhabditis elegans] 1.0E-111
blast CAB04568 Hypothetical protein K05C4.2 [Caenorhabditis elegans] ref|NP_493559.1| K05C4.2 [Caenorhabditis elegans] 1.0E-110
blast CAE72558 Hypothetical protein CBG19742 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR009787 EMBL-EBI Protein of unknown function DUF1352 1.0E-126
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.1E-9
Pfam IPR000859 EMBL-EBI CUB 6.7E-11
Pfam IPR000859 EMBL-EBI CUB 1.1E-11
Pfam IPR009787 EMBL-EBI Protein of unknown function DUF1352 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493559.1 4 35-52,77-99,106-128,150-172
K05C4.2.2 4 35-52,77-99,106-128,150-172
K05C4.2.1 4 35-52,77-99,106-128,150-172
SNAP00000018535 5 373-395,476-493,518-540,547-569,591-613
GENEFINDER00000018546 5 373-395,476-493,518-540,547-569,591-613
Sequence
Target Sequence 
>C. ELEGANS:177914_S_AT
gcacagcactaccaggagagcgctcaatacaagtcgatcctcaagtggttcttcgttcca
cacttcttgatcctggtcttcatgtggctcaaggttggcagcgaactcctccgaacaaat
ttcggatggaaaaacgcgttcttcgatcgactggacatgccgtcagcctacccatgggag
tatgtgtggtgcttctcattcattccgatcgtcctcgccatctattcgttccaacgaaac
aaactcaagatcctccactacgcctactatgccgagttcgtcgtcggaatcttcccatgc
atgatcgggcttggaggacaacttccagagctgatggagtatgctcaagacatggaggga
agcaacacaccgacattcaaaggaatcttcccgatggtcatcatatggtacatcttcttc
gcggtcgcactccagattcacggattctccatgtacttcatgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGCACTACCAGGAGAGCGCTC 506 317 79 Antisense
GAGAGCGCTCAATACAAGTCGATCC 281 395 94 Antisense
GTCGATCCTCAAGTGGTTCTTCGTT 453 473 111 Antisense
CCTGGTCTTCATGTGGCTCAAGGTT 151 267 150 Antisense
GCTCAAGGTTGGCAGCGAACTCCTC 22 295 165 Antisense
AAAAACGCGTTCTTCGATCGACTGG 465 127 208 Antisense
CCGTCAGCCTACCCATGGGAGTATG 407 265 238 Antisense
GTATGTGTGGTGCTTCTCATTCATT 63 457 258 Antisense
GAATCTTCCCATGCATGATCGGGCT 44 329 365 Antisense
TCGCACTCCAGATTCACGGATTCTC 706 599 503 Antisense
GGATTCTCCATGTACTTCATGCATC 471 509 520 Antisense
Sequence Source Affymetrix Proprietary Database