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[177912_at]

Description R07B5.5 /REP_DB=WormBase Gene ID /WP=CE06259 /TR=Q21786 /GB=CAA96665.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 05      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 3.3
(-3)
A 		3.7
(-2.8)
A 		3.7
(-2.8)
A 		15.3
(3)
A 		12
B 27.3
(3)
A 		6.8
(-2.1)
A 		13.7
(-0.4)
A 		3.4
(-3)
A 		24
C 2.6
(-3)
A 		3.9
(-2.8)
A 		4.3
(-2.8)
A 		47.8
(3)
A 		45
avr 11.1
(-0.8) 		4.8
(-3) 		7.2
(-2.2) 		22.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.9
(-1.3)
A 		2.2
(-3)
A 		18.6
(3)
A 		4.1
(-2.3)
A 		6.1
(-1.6)
A 		3.4
(-2.6)
A 		16
B 12.3
(3)
A 		4.3
(-1.5)
A 		3.8
(-1.8)
A 		3.9
(-1.8)
A 		7.4
(0.2)
A 		1.7
(-3)
A 		11
C 2.7
(-3)
A 		2.7
(-3)
A 		26.1
(3)
A 		2.6
(-3)
A 		13.2
(-0.3)
A 		11.4
(-0.8)
A 		24
avr 7.3
(-1.1) 		3.1
(-3) 		16.2
(3) 		3.5
(-2.8) 		8.9
(-0.3) 		5.5
(-1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-1.3)
A 		0.8
(-3)
A 		1
(-2.1)
A 		2.2
(3)
A 		1
B 8.7
(3)
A 		1.7
(-2.3)
A 		3.2
(-1.1)
A 		0.7
(-3)
A 		8
C 0.9
(-3)
A 		1.1
(-2.8)
A 		1.5
(-2.5)
A 		8.1
(3)
A 		7
avr 3.6
(2.8) 		1.2
(-3) 		1.9
(-1.3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.3
(-2.1)
A 		0.8
(-3)
A 		4.1
(3)
A 		1
(-2.6)
A 		1.8
(-1.2)
A 		0.8
(-3)
A 		3
B 4.3
(3)
A 		1.4
(-1.7)
A 		0.9
(-2.5)
A 		1
(-2.4)
A 		3
(0.9)
A 		0.6
(-3)
A 		4
C 1
(-2.5)
A 		0.8
(-2.7)
A 		6.7
(3)
A 		0.5
(-3)
A 		4.3
(0.7)
A 		3.8
(0.2)
A 		6
avr 2.2
(-0.3) 		1
(-2.6) 		3.9
(3) 		0.8
(-3) 		3
(1.3) 		1.7
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12440
Sequence Type Exemplar sequence
Representative Public ID R07B5.5 NCBI
Target Description R07B5.5 /REP_DB=WormBase Gene ID /WP=CE06259 /TR=Q21786 /GB=CAA96665.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073138(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073138 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-21) (srsx-21) mRNA, complete cds. 10/11 None
GENEFINDER00000041738 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9840561:9842090:1 9/11 None
R07B5.5 ENSEMBL cdna:known chromosome:CEL140:V:9840561:9842170:1 gene:R07B5.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041728 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9840560-9842193(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srsx-21
Ensembl R07B5.5
Entrez Gene 187652 Entrez gene
SwissProt Q21786 EMBL-EBI
WormBase CE34078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96665 Hypothetical protein R07B5.5 [Caenorhabditis elegans] ref|NP_505539.2| Serpentine Receptor, class SX family member (srsx-21) [Caenorhabditis elegans] 1.0E-157
blast CAE72266 Hypothetical protein CBG19386 [Caenorhabditis briggsae] 1.0E-128
blast CAE73597 Hypothetical protein CBG21082 [Caenorhabditis briggsae] 5.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505539.2 6 7-29,80-102,123-145,172-194,207-230,245-267
R07B5.5 6 7-29,80-102,123-145,172-194,207-230,245-267
GENEFINDER00000041738 6 7-29,80-102,123-145,172-194,207-230,245-267
Sequence
Target Sequence 
>C. ELEGANS:177912_AT
cacctggtattctttttggacttgcatttcttattgtaagcatgttgctacttaataatt
taaaagtggaaccatgtattctaccaaatgctatgccagaaaatgtctcaagcttctgga
atcaatacaatttgtggggcgctattgtgactattgtggtttatgtttatacgtacttgg
tagtttactgttgtgcgttcaaaaacaaaaccgaaaagaatattatgatccagaaagcaa
ttctcaacacagttattgtgggtgccgcggtgttctccatatcatcagtgttatctgcat
cgctaattgcaattacgagcaatatgaaaaatcctccgttggatccagatacagttgcaa
cttatgctgttattccaggactcgtttcttactcctgtaatttttatgtgtactactggc
gtagcaccgattaccgtaatgctttcatcaaacaattgtgttgtggaaaagtgttgacaa
ctcaagaggcagtggtttctactatcccaaccgctcttccgtcacccattatgaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTGGTATTCTTTTTGGACTTGC 330 197 410 Antisense
GTGGGGCGCTATTGTGACTATTGTG 492 489 543 Antisense
TGGTAGTTTACTGTTGTGCGTTCAA 88 549 587 Antisense
CACAGTTATTGTGGGTGCCGCGGTG 38 195 657 Antisense
GGTGTTCTCCATATCATCAGTGTTA 30 501 678 Antisense
TCAGTGTTATCTGCATCGCTAATTG 487 623 694 Antisense
AAATCCTCCGTTGGATCCAGATACA 400 117 738 Antisense
GTTATTCCAGGACTCGTTTCTTACT 664 445 778 Antisense
GGCGTAGCACCGATTACCGTAATGC 314 501 827 Antisense
AGAGGCAGTGGTTTCTACTATCCCA 216 67 894 Antisense
CTCTTCCGTCACCCATTATGAATAA 79 231 923 Antisense
Sequence Source Affymetrix Proprietary Database