[Home] | [Total List]

[177911_at]

Description C01F6.9 /REP_DB=WormBase Gene ID /WP=CE17361 /TR=O62023 /GB=CAA92441.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 78      6grp_total > 77      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1133
1 2 3 4 range
A 1403.4
(-3)
P 		2381.2
(3)
P 		2057.3
(1)
P 		2307.3
(2.5)
P 		978
B 1489.6
(-3)
P 		2166.8
(0.9)
P 		2536.4
(3)
P 		2503.3
(2.8)
P 		1047
C 1670.9
(-3)
P 		2225.8
(1.5)
P 		2278.7
(2)
P 		2405.7
(3)
P 		735
avr 1521.3
(-3) 		2257.9
(2) 		2290.8
(2.2) 		2405.4
(3) 		884

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 774
1 2 3 4 5 6 range
A 1138.8
(-3)
P 		1616.5
(1.2)
P 		1562.6
(0.7)
P 		1548.8
(0.6)
P 		1315.8
(-1.4)
P 		1822.1
(3)
P 		683
B 1365.8
(-1.3)
P 		1284
(-2.1)
P 		1830.3
(3)
P 		1185.1
(-3)
P 		1594.9
(0.8)
P 		1652.7
(1.3)
P 		645
C 1720.7
(1.5)
P 		1144.9
(-3)
P 		1469.7
(-0.5)
P 		1368.4
(-1.3)
P 		1762.3
(1.8)
P 		1912.6
(3)
P 		768
avr 1408.4
(-2.2) 		1348.5
(-3) 		1620.9
(0.7) 		1367.4
(-2.7) 		1557.7
(-0.2) 		1795.8
(3) 		447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 511
(2.2)
P 		516.9
(2.4)
P 		537.8
(3)
P 		337.7
(-3)
P 		200
B 475
(-3)
P 		535.1
(0.2)
P 		587.7
(3)
P 		533.4
(0.1)
P 		113
C 553.1
(-0.7)
P 		639.9
(0.6)
P 		794.2
(3)
P 		405.6
(-3)
P 		389
avr 513
(-0.6) 		564
(0.9) 		639.9
(3) 		425.6
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 209.9
(-3)
P 		574.9
(3)
P 		340.3
(-0.9)
P 		392.8
(0)
P 		397
(0.1)
P 		443.6
(0.8)
P 		365
B 475.2
(-0.1)
P 		427.4
(-1)
P 		444.5
(-0.7)
P 		313.9
(-3)
P 		648
(3)
P 		616.3
(2.4)
P 		334
C 637.8
(3)
P 		349.4
(-1.8)
P 		374.1
(-1.4)
P 		275.2
(-3)
P 		570.3
(1.8)
P 		640.3
(3)
P 		365
avr 441
(-0.2) 		450.6
(0.1) 		386.3
(-1.5) 		327.3
(-3) 		538.4
(2.3) 		566.7
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8983
Sequence Type Exemplar sequence
Representative Public ID C01F6.9 NCBI
Target Description C01F6.9 /REP_DB=WormBase Gene ID /WP=CE17361 /TR=O62023 /GB=CAA92441.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069182 NCBI Caenorhabditis elegans C01F6.9 (C01F6.9) mRNA, complete cds. 11/11 None
SNAP00000031435 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9095885:9096209:-1 11/11 None
GENEFINDER00000031447 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9095885:9096209:-1 11/11 None
C01F6.9 ENSEMBL cdna:known chromosome:CEL140:IV:9095734:9096209:-1 gene:C01F6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9095890-9096215(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F6.9
Entrez Gene 177731 Entrez gene
SwissProt O62023 EMBL-EBI
WormBase CE17361 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92441 Hypothetical protein C01F6.9 [Caenorhabditis elegans] ref|NP_501583.1| C01F6.9 [Caenorhabditis elegans] gb|AAK69379.1| Nx [Caenorhabditis elegans] 2.0E-14
blast CAE74107 Hypothetical protein CBG21767 [Caenorhabditis briggsae] 5.0E-13
blast CAE68384 Hypothetical protein CBG14140 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:177911_AT
atggctcgtggtcaacaaaagatccaatcgcaacagaagaatcaaaagaaggctgatgcc
gcaagaaaagccggaatcgaccagaaagctgcagctgccaaggcactcaatcacaaatgt
accgtctgtcttgccatgatgccagatccaaaaacttacaagcaacacttcgagaacaag
cacccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCGTGGTCAACAAAAGATCC 410 45 13 Antisense
AAGATCCAATCGCAACAGAAGAATC 125 155 31 Antisense
ATCAAAAGAAGGCTGATGCCGCAAG 263 27 53 Antisense
GATGCCGCAAGAAAAGCCGGAATCG 569 413 67 Antisense
GCCGGAATCGACCAGAAAGCTGCAG 533 283 82 Antisense
AAAGCTGCAGCTGCCAAGGCACTCA 192 125 97 Antisense
GCCAAGGCACTCAATCACAAATGTA 401 277 109 Antisense
CACAAATGTACCGTCTGTCTTGCCA 121 195 124 Antisense
CTGTCTTGCCATGATGCCAGATCCA 294 239 138 Antisense
AAAACTTACAAGCAACACTTCGAGA 109 129 163 Antisense
AACACTTCGAGAACAAGCACCCAAA 288 135 176 Antisense
Sequence Source Affymetrix Proprietary Database