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[177910_at]

Description C54G4.3 /REP_DB=WormBase Gene ID /WP=CE05509 /TR=Q18848 /GB=CAA99816.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 21.1
(-2.3)
A 		52
(3)
A 		16.8
(-3)
A 		51.3
(2.9)
A 		35
B 5.1
(-2.8)
A 		33
(3)
A 		11.3
(-1.5)
A 		4.1
(-3)
A 		29
C 8.8
(-3)
A 		17.8
(-2.1)
A 		20.3
(-1.8)
A 		68.5
(3)
A 		60
avr 11.7
(-3) 		34.3
(1.6) 		16.1
(-2.1) 		41.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 22.5
(-2.6)
A 		5
(-3)
A 		25.5
(-2.5)
A 		39.3
(-2.2)
A 		169
(0.6)
P 		276.2
(3)
P 		271
B 25.9
(-2.5)
A 		27.1
(-2.5)
A 		7.4
(-3)
A 		16.1
(-2.8)
A 		145.1
(0.6)
P 		236.4
(3)
P 		229
C 8
(-2.9)
A 		5.1
(-3)
A 		4.1
(-3)
A 		90.7
(-0.9)
A 		158.3
(0.7)
P 		251.6
(3)
P 		248
avr 18.8
(-2.8) 		12.4
(-3) 		12.3
(-3) 		48.7
(-2.1) 		157.5
(0.6) 		254.7
(3) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.7
(-0.1)
A 		11.3
(3)
A 		4.4
(-3)
A 		7.5
(-0.3)
A 		7
B 1.6
(-2.4)
A 		8.2
(3)
A 		2.6
(-1.6)
A 		0.9
(-3)
A 		7
C 2.9
(-3)
A 		5.1
(-1.5)
A 		7.1
(-0.1)
A 		11.6
(3)
A 		9
avr 4.1
(-3) 		8.2
(3) 		4.7
(-2.1) 		6.7
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		1.8
(-3)
A 		5.6
(-2.7)
A 		10
(-2.2)
A 		51
(1.5)
P 		67.2
(3)
P 		65
B 9
(-2.5)
A 		9
(-2.5)
A 		1.8
(-3)
A 		4.3
(-2.8)
A 		58.9
(1)
P 		88.1
(3)
P 		86
C 3
(-2.9)
A 		1.6
(-3)
A 		1
(-3)
A 		18.2
(-1.8)
A 		51.2
(0.6)
P 		84.2
(3)
P 		83
avr 5.4
(-2.8) 		4.1
(-2.9) 		2.8
(-3) 		10.8
(-2.4) 		53.7
(1) 		79.8
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2003
Sequence Type Exemplar sequence
Representative Public ID C54G4.3 NCBI
Target Description C54G4.3 /REP_DB=WormBase Gene ID /WP=CE05509 /TR=Q18848 /GB=CAA99816.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059801 NCBI Caenorhabditis elegans C54G4.3 (C54G4.3) mRNA, complete cds. 11/11 None
SNAP00000028898 ENSEMBL cdna:SNAP chromosome:CEL140:I:8013317:8016630:-1 11/11 None
GENEFINDER00000028909 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8013317:8014323:-1 11/11 None
C54G4.3 ENSEMBL cdna:known chromosome:CEL140:I:8013317:8014323:-1 gene:C54G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8013247-8014254(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G4.3
Entrez Gene 183812 Entrez gene
SwissProt Q18848 EMBL-EBI
WormBase CE05509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99816 Hypothetical protein C54G4.3 [Caenorhabditis elegans] ref|NP_492202.1| C54G4.3 [Caenorhabditis elegans] 1.0E-119
blast CAB70242 Hypothetical protein F58D5.7 [Caenorhabditis elegans] ref|NP_493044.1| F58D5.7 [Caenorhabditis elegans] 1.0E-99
blast CAB70242 Hypothetical protein F58D5.7 [Caenorhabditis elegans] ref|NP_493044.1| F58D5.7 [Caenorhabditis elegans] 6.0E-98
blast CAE63719 Hypothetical protein CBG08242 [Caenorhabditis briggsae] 7.0E-62
blast CAE63719 Hypothetical protein CBG08242 [Caenorhabditis briggsae] 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:177910_AT
acaaattcacaaggaccgctctggaaattcgaagtggatgaatcagaaaatggagaaggc
taaggctactgctgatcaagcgttagcctctacattgatggtcaaagatgtccaactatt
ggaaaagaaggtcaacatcctaaaagaatcagtggttcaagtgaataagtcattttataa
atatgagaaggacgttgatatgaatgatttaatggatcaagttattgatatggtgcatcg
tacggaaaagaaggaacaagatgcattggaggcccatgcaactgatgaacaagctattgg
aaaagccttccgtggagcaattgagggcctctatggtctgaaatcttccaattcaaaggt
catggaagaagctaaactgttggctggagagatgcgtgtttttagagatgctgcctctaa
caagaacttccacacaatgatctcgagaattgcatcgaatactgctacatctggagttcc
cttgaaatacagcagcggtcctgagagcagtttttcgacttctgcatacacttcgttttc
taa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATTCACAAGGACCGCTCTGGA 569 111 171 Antisense
GAAGGCTAAGGCTACTGCTGATCAA 554 333 225 Antisense
GCTGATCAAGCGTTAGCCTCTACAT 28 295 241 Antisense
TTGGAGGCCCATGCAACTGATGAAC 192 709 436 Antisense
GGGCCTCTATGGTCTGAAATCTTCC 204 493 495 Antisense
GATGCGTGTTTTTAGAGATGCTGCC 307 415 561 Antisense
GAACTTCCACACAATGATCTCGAGA 209 351 594 Antisense
AATACTGCTACATCTGGAGTTCCCT 192 173 628 Antisense
GTTCCCTTGAAATACAGCAGCGGTC 91 441 646 Antisense
GCAGCGGTCCTGAGAGCAGTTTTTC 465 311 662 Antisense
CTTCTGCATACACTTCGTTTTCTAA 312 221 689 Antisense
Sequence Source Affymetrix Proprietary Database