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[177909_at]

Description C34E7.1 /REP_DB=WormBase Gene ID /WP=CE03058 /TR=Q18456 /GB=CAA91792.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 62      6grp_total > 02      4grp_total > 47      6grp_cgc > 52      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 821.3
(3)
P 		401.9
(-2.3)
P 		347.4
(-3)
P 		415.3
(-2.1)
P 		474
B 615.7
(3)
P 		348.7
(-2.9)
P 		343.4
(-3)
P 		445.7
(-0.7)
P 		272
C 816.2
(3)
P 		405.1
(-2.9)
P 		398
(-3)
P 		399.3
(-3)
P 		418
avr 751.1
(3) 		385.2
(-2.7) 		362.9
(-3) 		420.1
(-2.1) 		388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 386.1
(-2.2)
P 		772.1
(3)
P 		329.6
(-3)
P 		532.1
(-0.3)
P 		566.4
(0.2)
P 		373.1
(-2.4)
P 		443
B 569.4
(3)
P 		497.3
(0.9)
P 		437.8
(-0.9)
P 		506.9
(1.1)
P 		512.4
(1.3)
P 		366.9
(-3)
P 		203
C 627.8
(2.5)
P 		478.1
(-0.1)
P 		606.8
(2.2)
P 		375.4
(-1.9)
P 		655.3
(3)
P 		311.3
(-3)
P 		344
avr 527.8
(1.6) 		582.5
(3) 		458.1
(-0.2) 		471.5
(0.1) 		578
(2.9) 		350.4
(-3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 299.1
(3)
P 		87.2
(-2.3)
P 		90.8
(-2.2)
P 		60.8
(-3)
P 		238
B 196.3
(3)
P 		86.1
(-2.7)
P 		79.6
(-3)
P 		95
(-2.2)
P 		117
C 270.2
(3)
P 		116.5
(-1.5)
P 		138.7
(-0.9)
P 		67.3
(-3)
P 		203
avr 255.2
(3) 		96.6
(-2.3) 		103
(-2.1) 		74.4
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 71.2
(-3)
P 		274.6
(3)
P 		71.8
(-3)
P 		135
(-1.1)
P 		170.9
(-0.1)
P 		90.8
(-2.4)
P 		203
B 198.1
(2.4)
P 		165.5
(0.5)
P 		106.3
(-3)
P 		134.3
(-1.4)
P 		208.2
(3)
P 		136.8
(-1.2)
P 		102
C 232.7
(3)
P 		145.9
(-0.3)
P 		154.4
(0)
P 		75.5
(-3)
P 		212.1
(2.2)
P 		104.2
(-1.9)
P 		157
avr 167.3
(0.9) 		195.3
(2.9) 		110.8
(-3) 		114.9
(-2.7) 		197.1
(3) 		110.6
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17947
Sequence Type Exemplar sequence
Representative Public ID C34E7.1 NCBI
Target Description C34E7.1 /REP_DB=WormBase Gene ID /WP=CE03058 /TR=Q18456 /GB=CAA91792.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077745 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) (pqn-18) mRNA, complete cds. 11/11 None
GENEFINDER00000036181 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12913242:12919544:1 11/11 None
C34E7.1.2 ENSEMBL cdna:known chromosome:CEL140:X:12907751:12919969:1 gene:C34E7.1 11/11 None
C34E7.1.1 ENSEMBL cdna:known chromosome:CEL140:X:12913233:12919969:1 gene:C34E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036175 1/11 Cross Hyb Matching Probes None
SNAP00000036176 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12913241-12916665(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-18
Ensembl C34E7.1
Entrez Gene 181425 Entrez gene
SwissProt Q18456 EMBL-EBI
WormBase CE36355 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91792 Hypothetical protein C34E7.1 [Caenorhabditis elegans] ref|NP_510146.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) [Caenorhabditis elegans] 1.0E-157
blast CAA91792 Hypothetical protein C34E7.1 [Caenorhabditis elegans] ref|NP_510146.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) [Caenorhabditis elegans] 1.0E-146
blast CAE57198 Hypothetical protein CBG00045 [Caenorhabditis briggsae] 1.0E-68
blast CAE57198 Hypothetical protein CBG00045 [Caenorhabditis briggsae] 9.0E-61
blast T19724 hypothetical protein C34E7.2 - Caenorhabditis elegans 7.0E-42
Sequence
Target Sequence 
>C. ELEGANS:177909_AT
gatcggacgatgggtactcagcaacatcaaatgatgggacaacatcaacaacaacaatct
accagcaaccctggcaacaatcaacaaatgcaacgtatgatgaacccaccagcgtactcg
caacaggaaaaacaacgcatggaacagtaccaacggcaacaacatcaatcccagatgcaa
agctaccaatctcaaatgcagcaatctatgaccccagtagttcaagccccggctccagca
aaaccggcaccgaagaacaactctaggaggaagagaacagtcaacaaagctaatctcgat
gagcctactcaggttccggctccgaattatcatttccaaccaccaccaagctatggatat
cagcagaacaacaatatgatgggaaatccccaagtaagtggacatcaaatggcaggtgga
caacaacaactccaacaccatgcaatgatgcatggtggtcctggaggctcgcagagccag
tatccaaacacaaagtcatcggaaatggtgcgcttagagcttcgtaattccattcaggcc
aaacagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGGACGATGGGTACTCAGCAAC 23 419 469 Antisense
ACAATCTACCAGCAACCCTGGCAAC 199 113 522 Antisense
TGCAACGTATGATGAACCCACCAGC 253 577 557 Antisense
AAATGCAGCAATCTATGACCCCAGT 322 119 662 Antisense
CTCGATGAGCCTACTCAGGTTCCGG 667 231 763 Antisense
TTCCGGCTCCGAATTATCATTTCCA 212 697 782 Antisense
TTTCCAACCACCACCAAGCTATGGA 99 667 801 Antisense
AACAACTCCAACACCATGCAATGAT 457 135 893 Antisense
GGTCCTGGAGGCTCGCAGAGCCAGT 105 503 925 Antisense
GTGCGCTTAGAGCTTCGTAATTCCA 574 477 976 Antisense
GTAATTCCATTCAGGCCAAACAGCA 89 461 992 Antisense
Sequence Source Affymetrix Proprietary Database