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[177908_at]

Description T06G6.5 /REP_DB=WormBase Gene ID /WP=CE13341 /TR=O62369 /GB=CAB04703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 34.3
(-3)
P 		35.6
(-2.8)
A 		66
(2.4)
A 		69.8
(3)
A 		36
B 50.1
(-2.3)
P 		92.3
(3)
P 		44.1
(-3)
A 		60
(-1)
A 		48
C 54
(-2.5)
P 		84.9
(3)
A 		67.1
(-0.2)
P 		51.3
(-3)
M 		34
avr 46.1
(-3) 		70.9
(3) 		59.1
(0.1) 		60.4
(0.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 71.4
(3)
A 		47.8
(0.4)
A 		57.9
(1.5)
A 		16.4
(-3)
A 		49.9
(0.7)
A 		46.1
(0.2)
A 		55
B 38.9
(-0.9)
A 		80.1
(3)
P 		39.1
(-0.9)
A 		16.9
(-3)
A 		46.2
(-0.2)
A 		35.5
(-1.2)
A 		63
C 53.5
(3)
A 		49.1
(2.3)
A 		16.8
(-3)
A 		38.5
(0.5)
A 		42.3
(1.2)
M 		23.2
(-2)
M 		37
avr 54.6
(2.2) 		59
(3) 		37.9
(-0.6) 		23.9
(-3) 		46.1
(0.8) 		34.9
(-1.1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.5
(0)
P 		7.7
(-3)
A 		17.2
(3)
A 		10.2
(-1.4)
A 		10
B 16
(-0.2)
P 		22.8
(3)
P 		10.2
(-3)
A 		12.8
(-1.8)
A 		13
C 17.9
(0.5)
P 		24.4
(3)
A 		23.4
(2.6)
P 		8.7
(-3)
M 		16
avr 15.5
(0.8) 		18.3
(3) 		16.9
(1.9) 		10.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.2
(1.2)
A 		17
(3)
A 		12.6
(0.9)
A 		4.2
(-3)
A 		15.1
(2.1)
A 		11.2
(0.3)
A 		13
B 13.6
(-0.5)
A 		26.7
(3)
P 		9.5
(-1.6)
A 		4.5
(-3)
A 		18.8
(0.9)
A 		13.3
(-0.6)
A 		22
C 19.8
(3)
A 		15
(1.1)
A 		4.3
(-3)
A 		7.7
(-1.7)
A 		13.7
(0.6)
M 		7.8
(-1.6)
M 		16
avr 15.5
(1.3) 		19.6
(3) 		8.8
(-1.6) 		5.5
(-3) 		15.9
(1.4) 		10.8
(-0.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2075
Sequence Type Exemplar sequence
Representative Public ID T06G6.5 NCBI
Target Description T06G6.5 /REP_DB=WormBase Gene ID /WP=CE13341 /TR=O62369 /GB=CAB04703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060823 NCBI Caenorhabditis elegans T06G6.5 (T06G6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021717 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12723021:12724581:1 11/11 None
SNAP00000021711 ENSEMBL cdna:SNAP chromosome:CEL140:I:12723783:12724581:1 11/11 None
T06G6.5 ENSEMBL cdna:known chromosome:CEL140:I:12723783:12724581:1 gene:T06G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12723713-12724512(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06G6.5
Entrez Gene 188197 Entrez gene
SwissProt O62369 EMBL-EBI
WormBase CE13341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04703 Hypothetical protein T06G6.5 [Caenorhabditis elegans] ref|NP_493224.1| T06G6.5 [Caenorhabditis elegans] 1.0E-115
blast CAB02979 Hypothetical protein F23A7.6 [Caenorhabditis elegans] ref|NP_510645.1| F23A7.6 [Caenorhabditis elegans] 4.0E-49
blast CAB02979 Hypothetical protein F23A7.6 [Caenorhabditis elegans] ref|NP_510645.1| F23A7.6 [Caenorhabditis elegans] 8.0E-47
Sequence
Target Sequence 
>C. ELEGANS:177908_AT
gagctcaacaatcttggggagtcccaacttgggggacacttctgttgaagagaccccact
tgttaaatctctcgatatgccagcaggtcgcgtttcatctttgaacatcaccatgaaaca
catagttccattcatcaaagaaattctcccaattttgaagtcttctgaacactatgcacc
ttacacaccggagattttgaaggcattgatgattttcgagtttggcatcgtcaaatatta
ttgcgatgactttgcactgaatattataaaatcctccgggaaacatgtacagtacttccg
agaaaagcacgccgagccgagaaaacggaagatgactaataatgtttcatgcgagtaccc
cgtatacctgcaatatgacagagagaaaaaaggatatctttgtgacaaatgttcgttcat
cggccagtcgttgccaaggttgaaccttcacttctatttcgagcatgccaagaatcaagt
cggagatatcagtgagaaaacaaagaagatgaagcttgaccatgatcaaccatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCAACAATCTTGGGGAGTCCC 655 385 24 Antisense
AACTTGGGGGACACTTCTGTTGAAG 97 137 49 Antisense
AGACCCCACTTGTTAAATCTCTCGA 208 71 74 Antisense
AAATCTCTCGATATGCCAGCAGGTC 63 119 88 Antisense
GAAGTCTTCTGAACACTATGCACCT 19 337 180 Antisense
CTATGCACCTTACACACCGGAGATT 213 225 195 Antisense
TAATGTTTCATGCGAGTACCCCGTA 310 635 363 Antisense
GTACCCCGTATACCTGCAATATGAC 512 457 378 Antisense
GACAAATGTTCGTTCATCGGCCAGT 91 365 427 Antisense
ATCGGCCAGTCGTTGCCAAGGTTGA 312 33 442 Antisense
GAAGCTTGACCATGATCAACCATCG 497 341 534 Antisense
Sequence Source Affymetrix Proprietary Database