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[177907_at]

Description C36E8.4 /REP_DB=WormBase Gene ID /WP=CE00912 /TR=Q18501 /GB=CAA84647.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 372.3
(3)
P 		318.3
(1.8)
P 		281.8
(1)
P 		100.5
(-3)
P 		272
B 388.9
(1.3)
P 		485.2
(3)
P 		290
(-0.5)
P 		149.3
(-3)
P 		336
C 505.9
(3)
P 		394.4
(1.3)
P 		408
(1.5)
P 		111.2
(-3)
P 		395
avr 422.4
(3) 		399.3
(2.5) 		326.6
(1.1) 		120.3
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 368.3
(1.2)
P 		420.7
(2.6)
P 		426.1
(2.7)
P 		437.5
(3)
P 		252.4
(-1.7)
P 		201.7
(-3)
P 		236
B 444.7
(2.5)
P 		470.5
(3)
P 		449.1
(2.6)
P 		380.6
(1.3)
P 		282.2
(-0.5)
P 		149.7
(-3)
P 		321
C 387.7
(1.9)
P 		391.3
(2)
P 		430.9
(3)
P 		377.3
(1.7)
P 		186.7
(-3)
P 		206.3
(-2.5)
P 		244
avr 400.2
(2.2) 		427.5
(2.8) 		435.4
(3) 		398.5
(2.1) 		240.4
(-1.7) 		185.9
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 135.6
(3)
P 		69.1
(-0.3)
P 		73.7
(-0.1)
P 		14.7
(-3)
P 		121
B 124
(3)
P 		119.8
(2.7)
P 		67.2
(-0.7)
P 		31.8
(-3)
P 		92
C 167.5
(3)
P 		113.4
(0.8)
P 		142.2
(2)
P 		18.7
(-3)
P 		149
avr 142.4
(3) 		100.8
(0.9) 		94.4
(0.6) 		21.7
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 67.9
(-1.9)
P 		149.6
(3)
P 		92.8
(-0.4)
P 		111
(0.7)
P 		76.2
(-1.4)
P 		49.1
(-3)
P 		101
B 154.7
(2.9)
P 		156.6
(3)
P 		109
(0.2)
P 		100.8
(-0.3)
P 		114.6
(0.5)
P 		55.8
(-3)
P 		101
C 143.7
(3)
P 		119.4
(1.2)
P 		109.7
(0.6)
P 		75.9
(-1.9)
P 		60.4
(-3)
P 		69.1
(-2.4)
P 		83
avr 122.1
(1.6) 		141.9
(3) 		103.8
(0.3) 		95.9
(-0.3) 		83.7
(-1.2) 		58
(-3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7080
Sequence Type Exemplar sequence
Representative Public ID C36E8.4 NCBI
Target Description C36E8.4 /REP_DB=WormBase Gene ID /WP=CE00912 /TR=Q18501 /GB=CAA84647.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065404 NCBI Caenorhabditis elegans C36E8.4 (C36E8.4) mRNA, complete cds. 11/11 None
SNAP00000019687 ENSEMBL cdna:SNAP chromosome:CEL140:III:4012319:4015715:1 11/11 None
GENEFINDER00000019693 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4012319:4015715:1 11/11 None
C36E8.4 ENSEMBL cdna:known chromosome:CEL140:III:4012311:4015737:1 gene:C36E8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4012318-4015540(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E8.4
Entrez Gene 183279 Entrez gene
SwissProt Q18501 EMBL-EBI
WormBase CE31439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599915_AT similar to nitric oxide synthase trafficker cfa
CANINE:1583760_S_AT similar to nitric oxide synthase trafficker cfa
CANINE:1583759_AT similar to nitric oxide synthase trafficker cfa
CANINE_2:CFA.19615.1.S1_S_AT similar to nitric oxide synthase trafficker cfa
CANINE_2:CFA.5230.1.A1_AT similar to nitric oxide synthase trafficker cfa
CANINE_2:CFA.5230.1.A1_S_AT similar to nitric oxide synthase trafficker cfa
DROSOPHILA_2:1627173_AT dm
DROSGENOME1:144722_AT dm
HU35KSUBB:RC_T57770_AT nitric oxide synthase trafficker hs
U133_X3P:HS.10260.0.A1_3P_AT nitric oxide synthase trafficker hs
HG-U133_PLUS_2:226992_AT nitric oxide synthase trafficker hs
HG-U133B:226992_AT nitric oxide synthase trafficker hs
HG-U95B:56167_AT nitric oxide synthase trafficker hs
HG-U95D:82538_AT nitric oxide synthase trafficker hs
HG-U133_PLUS_2:235506_AT Nitric oxide synthase trafficker hs
HG-U133B:235506_AT Nitric oxide synthase trafficker hs
HU35KSUBC:RC_N74106_AT Nitric oxide synthase trafficker hs
U133_X3P:HS.50439.0.A1_3P_AT Nitric oxide synthase trafficker hs
HG-U95B:46886_AT Nitric oxide synthase trafficker hs
HG-U95E:68118_R_AT Nitric oxide synthase trafficker hs
MG-U74CV2:135828_AT nitric oxide synthase trafficker mm
MOE430B:1441075_AT nitric oxide synthase trafficker mm
MOUSE430_2:1441075_AT nitric oxide synthase trafficker mm
RAE230B:1395408_AT nitric oxide synthase trafficking rn
RAT230_2:1395408_AT nitric oxide synthase trafficking rn
Protein Similarities
Method ID Description E-Value
blast CAA84647 Hypothetical protein C36E8.4 [Caenorhabditis elegans] ref|NP_497805.2| C36E8.4 [Caenorhabditis elegans] 0.0
blast CAE60097 Hypothetical protein CBG03621 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:177907_AT
caaccatcaacttcagctgtcaatcatattaccctgattgatcttcatgctgaaaatttc
ggagaagtcatgtcttcgacacgacgccgtcagaatcttgaacgagtttcaggagtattg
gattcagaattgaagagactttacaacaatcagacagctgacgttatggtgtctaattca
aagcaaattagcgttttggaattcatcgaatatctgtactacaagttgaatgattcaata
aatattgtggatggaggtcaaaatcgaggttttcacagattatccaggtttcaacataag
attaaagataaatcgggtcttccaatgacaattctcacaattccattatccggtgataat
aacagtcttccaccaccttgtctatcaatggaagcatcaactgcttatccgtcaccacgt
ggcagtggagagtacgaagaatatgaaaagatatccgacgacggtttctactcaacaaca
acaacatcatcaaatggtggtcctattcgaacaactacaactttcgatgagcccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATCAACTTCAGCTGTCAATC 658 185 913 Antisense
ATTACCCTGATTGATCTTCATGCTG 300 13 940 Antisense
GAAGTCATGTCTTCGACACGACGCC 222 337 976 Antisense
ACACGACGCCGTCAGAATCTTGAAC 76 109 991 Antisense
GGGTCTTCCAATGACAATTCTCACA 565 497 1227 Antisense
TGATAATAACAGTCTTCCACCACCT 429 565 1266 Antisense
GAAGCATCAACTGCTTATCCGTCAC 524 341 1303 Antisense
TATCCGTCACCACGTGGCAGTGGAG 519 657 1318 Antisense
GATATCCGACGACGGTTTCTACTCA 47 427 1362 Antisense
GTGGTCCTATTCGAACAACTACAAC 184 487 1409 Antisense
AACTACAACTTTCGATGAGCCCACT 170 141 1425 Antisense
Sequence Source Affymetrix Proprietary Database