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[177906_s_at]

Description F14F7.4 /REP_DB=WormBase Gene ID /WP=CE15824 /TR=O17804 /GB=CAB04110.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.1
(-3)
A 		18.7
(0.3)
A 		16.8
(-0.1)
A 		33.2
(3)
A 		32
B 1.1
(-3)
A 		2.9
(-2.5)
A 		2.3
(-2.7)
A 		24.5
(3)
A 		23
C 1.3
(-3)
A 		4.6
(-2.1)
A 		1.3
(-3)
A 		24.5
(3)
A 		23
avr 1.2
(-3) 		8.7
(-1.3) 		6.8
(-1.7) 		27.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 1.4
(-3)
A 		4.5
(-2.6)
A 		1.9
(-2.9)
A 		14.2
(-1.5)
A 		18
(-1)
A 		52.4
(3)
A 		51
B 0.9
(-3)
A 		3.2
(-2.7)
A 		1.5
(-2.9)
A 		5.4
(-2.3)
A 		7.5
(-2)
A 		41.4
(3)
P 		41
C 2.2
(-3)
A 		1.7
(-3)
A 		5.2
(-2.7)
A 		1.8
(-3)
A 		32
(-0.4)
P 		72.7
(3)
P 		71
avr 1.5
(-3) 		3.1
(-2.8) 		2.9
(-2.8) 		7.1
(-2.4) 		19.2
(-1) 		55.5
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-3)
A 		4.1
(1.9)
A 		4.4
(2.3)
A 		4.9
(3)
A 		5
B 0.4
(-3)
A 		0.7
(-2.6)
A 		0.5
(-2.9)
A 		5.2
(3)
A 		5
C 0.4
(-3)
A 		1.3
(-1.5)
A 		0.4
(-3)
A 		4.1
(3)
A 		4
avr 0.4
(-3) 		2
(-0.8) 		1.8
(-1) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.6
(-2.4)
A 		0.4
(-3)
A 		3.6
(-1.4)
A 		5.4
(-0.6)
A 		12.8
(3)
A 		13
B 0.3
(-3)
A 		1.1
(-2.7)
A 		0.4
(-3)
A 		1.4
(-2.6)
A 		3
(-1.9)
A 		15.4
(3)
P 		15
C 0.8
(-2.9)
A 		0.5
(-3)
A 		1.3
(-2.8)
A 		0.4
(-3)
A 		10.4
(-0.5)
P 		24.3
(3)
P 		24
avr 0.5
(-3) 		1.1
(-2.8) 		0.7
(-2.9) 		1.8
(-2.5) 		6.3
(-1) 		17.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177906_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7749
Sequence Type Exemplar sequence
Representative Public ID F14F7.4 NCBI
Target Description F14F7.4 /REP_DB=WormBase Gene ID /WP=CE15824 /TR=O17804 /GB=CAB04110.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067305 NCBI Caenorhabditis elegans F14F7.4 (F14F7.4) mRNA, complete cds. 11/11 None
SNAP00000000291 ENSEMBL cdna:SNAP chromosome:CEL140:III:13019766:13030908:-1 11/11 None
GENEFINDER00000000296 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13027959:13029180:-1 11/11 None
F14F7.4 ENSEMBL cdna:known chromosome:CEL140:III:13027909:13029180:-1 gene:F14F7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13027954-13029176(-) 94.02 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F7.4
Entrez Gene 176725 Entrez gene
SwissProt O17804 EMBL-EBI
WormBase CE28822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04110 Hypothetical protein F14F7.4 [Caenorhabditis elegans] ref|NP_499706.1| F14F7.4 [Caenorhabditis elegans] 1.0E-147
blast CAB04110 Hypothetical protein F14F7.4 [Caenorhabditis elegans] ref|NP_499706.1| F14F7.4 [Caenorhabditis elegans] 1.0E-145
blast CAB04110 Hypothetical protein F14F7.4 [Caenorhabditis elegans] ref|NP_499706.1| F14F7.4 [Caenorhabditis elegans] 1.0E-137
blast CAE69567 Hypothetical protein CBG15779 [Caenorhabditis briggsae] 6.0E-67
blast CAE69567 Hypothetical protein CBG15779 [Caenorhabditis briggsae] 3.0E-66
blast CAE69567 Hypothetical protein CBG15779 [Caenorhabditis briggsae] 5.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499706.1 3 31-53,58-80,101-123
F14F7.4 3 31-53,58-80,101-123
SNAP00000000291 3 54-76,86-108,319-341
GENEFINDER00000000296 3 31-53,58-80,101-123
Sequence
Target Sequence 
>C. ELEGANS:177906_S_AT
gaaagctgccgtttatatgacatatttcttcgtttttcaatcgatttccaaatggacttt
tggaattgccacgttggataaagtcatgggatgggcttttcaactgaaaccgcagattaa
tttgaagccacaaattctgaaacatctgagaaaatgcagcattttctcagatgtttcagc
tgaaataaataaaatcggaaaaagcaagtcgtctgaaagtgtcatctcggtgaaaaataa
agtcggcactgctatgcacgttggatttgaatctgaagatgaggacaccagaaagactat
taaaaacttgggaaaaatgaaacggagagtggattttgtgacggaagttgccgatgcatt
tatgatgggacaagaagctaccggcgacgaagaagacgagagcaattggcaagacgcgag
aacgttggatttgctcgtggagccggatgagtcgacgtgtcaggtgcagaaatggctgga
agatggaggctcaatggattcagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCTGCCGTTTATATGACATAT 520 357 309 Antisense
GACATATTTCTTCGTTTTTCAATCG 276 371 327 Antisense
GTCATGGGATGGGCTTTTCAACTGA 42 467 391 Antisense
GTCGTCTGAAAGTGTCATCTCGGTG 185 473 516 Antisense
AAAGTCGGCACTGCTATGCACGTTG 592 121 547 Antisense
GTTGCCGATGCATTTATGATGGGAC 160 441 655 Antisense
TGGGACAAGAAGCTACCGGCGACGA 444 551 674 Antisense
GAGAACGTTGGATTTGCTCGTGGAG 203 393 726 Antisense
GTGGAGCCGGATGAGTCGACGTGTC 647 487 745 Antisense
AGTCGACGTGTCAGGTGCAGAAATG 602 59 758 Antisense
GATGGAGGCTCAATGGATTCAGATG 459 405 790 Antisense
Sequence Source Affymetrix Proprietary Database