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[177904_at]

Description D2023.3 /REP_DB=WormBase Gene ID /WP=CE09073 /TR=P90785 /GB=CAB02875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 38      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 312.5
(3)
A 		115.5
(-1.6)
A 		57.8
(-3)
A 		252.3
(1.6)
A 		255
B 343.9
(3)
A 		127.2
(-3)
A 		142
(-2.6)
A 		198.7
(-1)
A 		217
C 312.4
(3)
P 		234.3
(0.8)
A 		103.1
(-3)
A 		157.9
(-1.4)
A 		209
avr 322.9
(3) 		159
(-1.4) 		101
(-3) 		203
(-0.2) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 394.2
(3)
A 		236.9
(-0.7)
P 		169.7
(-2.3)
A 		192.3
(-1.8)
A 		141
(-3)
A 		148.4
(-2.8)
A 		253
B 353.3
(3)
P 		287.9
(1.4)
A 		164.8
(-1.7)
A 		134.3
(-2.5)
A 		144
(-2.2)
A 		112.7
(-3)
A 		241
C 222.3
(2.1)
P 		179.7
(-0)
A 		240
(3)
A 		196.1
(0.8)
A 		135.5
(-2.3)
A 		121.3
(-3)
A 		119
avr 323.3
(3) 		234.8
(0.3) 		191.5
(-1) 		174.2
(-1.6) 		140.2
(-2.6) 		127.5
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 113.8
(3)
A 		25.1
(-2.4)
A 		15.1
(-3)
A 		36.9
(-1.7)
A 		99
B 109.7
(3)
A 		31.4
(-3)
A 		32.9
(-2.9)
A 		42.3
(-2.2)
A 		78
C 103.4
(3)
P 		67.4
(0.2)
A 		35.9
(-2.3)
A 		26.6
(-3)
A 		77
avr 109
(3) 		41.3
(-2) 		28
(-3) 		35.3
(-2.5) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 72.7
(1.6)
A 		84.3
(3)
P 		37
(-2.9)
A 		48.8
(-1.4)
A 		42.5
(-2.2)
A 		36.1
(-3)
A 		48
B 122.9
(3)
P 		95.8
(1.1)
A 		40
(-2.7)
A 		35.6
(-3)
A 		58.5
(-1.4)
A 		42
(-2.6)
A 		87
C 82.4
(3)
P 		54.8
(-0.9)
A 		61.1
(0)
A 		39.4
(-3)
A 		43.9
(-2.4)
A 		40.6
(-2.8)
A 		43
avr 92.7
(3) 		78.3
(1.4) 		46
(-2.3) 		41.3
(-2.8) 		48.3
(-2) 		39.6
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13657
Sequence Type Exemplar sequence
Representative Public ID D2023.3 NCBI
Target Description D2023.3 /REP_DB=WormBase Gene ID /WP=CE09073 /TR=P90785 /GB=CAB02875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073575 NCBI Caenorhabditis elegans D2023.3 (D2023.3) mRNA, complete cds. 11/11 None
D2023.3 ENSEMBL cdna:known chromosome:CEL140:V:11806508:11809352:-1 gene:D2023.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024925 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024938 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11806507-11809352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2023.3
Entrez Gene 183945 Entrez gene
SwissProt P90785 EMBL-EBI
WormBase CE09073 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02875 Hypothetical protein D2023.3 [Caenorhabditis elegans] ref|NP_505976.1| D2023.3 [Caenorhabditis elegans] 1.0E-139
blast CAE75295 Hypothetical protein CBG23263 [Caenorhabditis briggsae] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 8.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505976.1 1 61-83
D2023.3 1 61-83
Sequence
Target Sequence 
>C. ELEGANS:177904_AT
ttctttgttcattgtctttttcccaaaaaagcaagactcaaaaatacacgctccacggaa
tctcttttttgctgtttcttatgccttcctattctcttttcttgacattttatatccttg
ttttcagccatcaatgcattcaaatggtatttcacgtggacataatggagacagtcggag
aagtagtatggttgatgcaactggaagattttgtagtcaaccgatgagcggttctcccga
gattctcgttggcctctgctatgatgataaacatgaagttgtgtcagtctgtattgagaa
agcatcttcacttggttcagacactgctcatcctccagattcttttataagaataattgg
tcttgatgaattcagcacagagctctctcgtcataaaacagatacagtgaagcattcaac
acaaccagtttacagtcatcattgtactatgagattttcaaaagacaaagtcgagacatc
aacagtccgagttgaagtatggacagtcaccggaattcttcgtcgtaaagttcaaattgg
ctcaatttccattggatttgcttcatcaacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGTTCATTGTCTTTTTCCCA 391 691 135 Antisense
AAATACACGCTCCACGGAATCTCTT 326 117 176 Antisense
TTCCTATTCTCTTTTCTTGACATTT 592 699 220 Antisense
TTTATATCCTTGTTTTCAGCCATCA 188 675 243 Antisense
GTCAACCGATGAGCGGTTCTCCCGA 304 463 350 Antisense
TCTCGTTGGCCTCTGCTATGATGAT 548 609 378 Antisense
GCATCTTCACTTGGTTCAGACACTG 506 309 436 Antisense
GCTCATCCTCCAGATTCTTTTATAA 464 301 460 Antisense
TTCAGCACAGAGCTCTCTCGTCATA 268 685 505 Antisense
GACAGTCACCGGAATTCTTCGTCGT 317 369 636 Antisense
CCATTGGATTTGCTTCATCAACCCC 602 253 683 Antisense
Sequence Source Affymetrix Proprietary Database