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[177903_s_at]

Description F09B9.1 /REP_DB=WormBase Gene ID /WP=CE15758 /TR=Q19239 /GB=CAA90058.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 63      6grp_total > 81      4grp_total > 39      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 349.2
(3)
P 		255.5
(-3)
P 		284.4
(-1.1)
P 		328.4
(1.7)
P 		94
B 327
(3)
P 		196.6
(-3)
P 		305.5
(2)
P 		267.7
(0.3)
P 		130
C 376.5
(3)
P 		181.8
(-3)
P 		304.3
(0.8)
P 		257.2
(-0.7)
P 		195
avr 350.9
(3) 		211.3
(-3) 		298.1
(0.7) 		284.4
(0.1) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 511.1
(-1.8)
P 		381.7
(-3)
P 		693.1
(-0)
P 		1009
(3)
P 		732.4
(0.4)
P 		564.1
(-1.3)
P 		627
B 537.7
(-1.9)
P 		458
(-3)
P 		781.9
(1.3)
P 		909.4
(3)
P 		813.4
(1.7)
P 		578.4
(-1.4)
P 		451
C 468.1
(-2.7)
P 		433.9
(-3)
P 		669.9
(-1)
P 		1133.1
(3)
P 		729.4
(-0.5)
P 		521.4
(-2.2)
P 		699
avr 505.6
(-2.2) 		424.5
(-3) 		715
(-0.1) 		1017.2
(3) 		758.4
(0.4) 		554.6
(-1.7) 		593
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 127.1
(3)
P 		55.5
(-2.4)
P 		74.3
(-1)
P 		48.1
(-3)
P 		79
B 104.3
(3)
P 		48.5
(-3)
P 		70.8
(-0.6)
P 		57
(-2.1)
P 		56
C 124.6
(3)
P 		52.3
(-2.3)
P 		106.1
(1.6)
P 		43.4
(-3)
P 		81
avr 118.7
(3) 		52.1
(-2.8) 		83.7
(-0) 		49.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 94.2
(-3)
P 		135.8
(-1.5)
P 		150.9
(-0.9)
P 		255.9
(3)
P 		221
(1.7)
P 		137.3
(-1.4)
P 		162
B 187.1
(-1.8)
P 		152.5
(-3)
P 		189.9
(-1.7)
P 		240.9
(-0)
P 		330.5
(3)
P 		215.7
(-0.9)
P 		178
C 173.5
(-0.6)
P 		132.4
(-3)
P 		170.5
(-0.8)
P 		227.9
(2.5)
P 		236
(3)
P 		174.5
(-0.6)
P 		104
avr 151.6
(-2.4) 		140.2
(-3) 		170.4
(-1.5) 		241.6
(2) 		262.5
(3) 		175.8
(-1.3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177903_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16124
Sequence Type Exemplar sequence
Representative Public ID F09B9.1 NCBI
Target Description F09B9.1 /REP_DB=WormBase Gene ID /WP=CE15758 /TR=Q19239 /GB=CAA90058.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077300 NCBI Caenorhabditis elegans F09B9.1 (F09B9.1) mRNA, complete cds. 11/11 None
SNAP00000037094 ENSEMBL cdna:SNAP chromosome:CEL140:X:10139401:10141933:-1 11/11 None
GENEFINDER00000037100 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10139401:10141933:-1 11/11 None
F09B9.1 ENSEMBL cdna:known chromosome:CEL140:X:10139307:10141934:-1 gene:F09B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10139400-10141933(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09B9.1
Entrez Gene 181226 Entrez gene
SwissProt Q19239 EMBL-EBI
WormBase CE15758 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626764_AT dm
DROSGENOME1:150456_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90058 Hypothetical protein F09B9.1 [Caenorhabditis elegans] ref|NP_509701.1| F09B9.1 [Caenorhabditis elegans] 0.0
blast CAE58792 Hypothetical protein CBG01998 [Caenorhabditis briggsae] 0.0
blast CAE62486 Hypothetical protein CBG06590 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509701.1 11 192-211,266-288,303-325,348-370,415-437,444-466,486-508,515-537,557-579,592-611,626-648
F09B9.1 11 192-211,266-288,303-325,348-370,415-437,444-466,486-508,515-537,557-579,592-611,626-648
SNAP00000037094 11 192-211,266-288,303-325,348-370,415-437,444-466,486-508,515-537,557-579,592-611,626-648
GENEFINDER00000037100 11 192-211,266-288,303-325,348-370,415-437,444-466,486-508,515-537,557-579,592-611,626-648
Sequence
Target Sequence 
>C. ELEGANS:177903_S_AT
cagactcaactgggtgctgtctcttgctggatggattatagcagttgttattgctggatt
ttgtcttttcgcgacatatgattacgacaaggggtcacactggagtgtattcacgagagg
aacattctataatttccatcgtcttggatggggaatgtttatttgctgggtggtagctgc
taatcatatgggatggggaggccctattgataagtttatgtctcatccaatctggcaacc
atttggaaggctatcttattgtgcttatatagttcactgggtcgtacttttctggttttt
gaatgttggtggacatgcaacacattactactcagcactggaagtgttcacttacacatc
gattccagcgacttttctttcgtatatttttgcatttttctggagctgtttgtttgagat
tcctaccttaaaacttgaaaaaatgctgattgaagcaatcctgggaaccggaagaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACTCAACTGGGTGCTGTCTCTT 609 205 1545 Antisense
TGCTGTCTCTTGCTGGATGGATTAT 339 583 1559 Antisense
ACATTCTATAATTTCCATCGTCTTG 360 105 1666 Antisense
ATGTCTCATCCAATCTGGCAACCAT 75 49 1762 Antisense
GAAGGCTATCTTATTGTGCTTATAT 665 333 1790 Antisense
TAGTTCACTGGGTCGTACTTTTCTG 189 651 1814 Antisense
GCAACACATTACTACTCAGCACTGG 517 319 1861 Antisense
AAGTGTTCACTTACACATCGATTCC 362 159 1886 Antisense
GATTCCAGCGACTTTTCTTTCGTAT 212 433 1905 Antisense
GAGCTGTTTGTTTGAGATTCCTACC 561 387 1947 Antisense
GCAATCCTGGGAACCGGAAGACCGT 572 317 1999 Antisense
Sequence Source Affymetrix Proprietary Database