[Home] | [Total List]

[177901_at]

Description R07B5.4 /REP_DB=WormBase Gene ID /WP=CE06258 /TR=Q21785 /GB=CAA96664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 01      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 48.2
(-3)
A 		56.6
(-2.1)
A 		58.1
(-1.9)
A 		103.5
(3)
A 		55
B 12.3
(-3)
A 		14.4
(-2.8)
A 		37.8
(-0.9)
A 		86.5
(3)
M 		74
C 47.5
(-1.5)
A 		20.1
(-2.9)
A 		18
(-3)
A 		139.2
(3)
P 		121
avr 36
(-2.6) 		30.4
(-3) 		38
(-2.4) 		109.7
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 40.5
(-0.9)
A 		12.1
(-2.6)
A 		102.2
(3)
P 		6.2
(-3)
A 		47.9
(-0.4)
A 		20.7
(-2.1)
A 		96
B 5.6
(-2.8)
A 		59.8
(3)
M 		43.2
(1.2)
A 		35.7
(0.4)
A 		42.9
(1.2)
P 		4.2
(-3)
A 		56
C 55.5
(-1.4)
A 		118.5
(3)
P 		41.6
(-2.3)
A 		51.3
(-1.7)
A 		51.5
(-1.7)
A 		32.2
(-3)
A 		86
avr 33.9
(-1) 		63.5
(3) 		62.3
(2.8) 		31.1
(-1.4) 		47.4
(0.8) 		19
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.6
(3)
A 		12.3
(-3)
A 		15.2
(0.3)
A 		15.2
(0.3)
A 		5
B 3.9
(-2.9)
A 		3.6
(-3)
A 		8.8
(-0.9)
A 		18.4
(3)
M 		15
C 15.7
(0.4)
A 		5.8
(-3)
A 		6.3
(-2.8)
A 		23.5
(3)
P 		18
avr 12.4
(-0.4) 		7.2
(-3) 		10.1
(-1.5) 		19
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 7.5
(-1.3)
A 		4.3
(-2.2)
A 		22.2
(3)
P 		1.6
(-3)
A 		14.5
(0.8)
A 		5.1
(-2)
A 		21
B 2
(-2.9)
A 		19.9
(3)
M 		10.5
(-0.1)
A 		9.5
(-0.4)
A 		17.4
(2.2)
P 		1.6
(-3)
A 		18
C 20.6
(-0.6)
A 		36.2
(3)
P 		10.6
(-2.9)
A 		10.3
(-3)
A 		16.7
(-1.5)
A 		10.8
(-2.9)
A 		26
avr 10
(-1.2) 		20.1
(3) 		14.4
(0.6) 		7.1
(-2.5) 		16.2
(1.4) 		5.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12319
Sequence Type Exemplar sequence
Representative Public ID R07B5.4 NCBI
Target Description R07B5.4 /REP_DB=WormBase Gene ID /WP=CE06258 /TR=Q21785 /GB=CAA96664.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073137 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-38) (sru-38) mRNA, complete cds. 11/11 None
GENEFINDER00000041733 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9835332:9838627:-1 11/11 None
R07B5.4 ENSEMBL cdna:known chromosome:CEL140:V:9837045:9838627:-1 gene:R07B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9837044-9838627(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-38
Ensembl R07B5.4
Entrez Gene 187651 Entrez gene
SwissProt Q21785 EMBL-EBI
WormBase CE06258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 0.0
blast CAE72258 Hypothetical protein CBG19377 [Caenorhabditis briggsae] 0.0
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 1.0E-179
blast CAE72258 Hypothetical protein CBG19377 [Caenorhabditis briggsae] 1.0E-132
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505538.1 7 20-42,67-89,109-131,152-174,204-226,249-271,281-303
R07B5.4 7 20-42,67-89,109-131,152-174,204-226,249-271,281-303
GENEFINDER00000041733 11 20-42,67-89,109-131,152-174,204-226,249-271,281-303,350-372,407-429,449-471,484-506
Sequence
Target Sequence 
>C. ELEGANS:177901_AT
acatctcatcttttaacattggcgttttgtgttcaaagagttgcgttgttgtatgcggat
gaatatcagaaagatataatatcaaaagtgtttgacattgtctgcccaattcttattgtt
tttggtcattctctcggtattcctcatttgcttctcacaacttcttgttttcaaatggga
attccatatccatttggttcaattgttataacggccagccggatggatatgccagtttat
gcaataatatatgcaatttccacaaatgcaatgattgttttgatcgttgttacaacgatt
ttcatgtttgcaaaactacatcagaagcgaaaattaagcgctgagttgcatcgtacctac
aattcaaaatctgagaaggtactgactgcaacaatgatttttattatccttcctattgta
atgcctgcaattctgtcgattgttgatatattcgcttacggtctttatccatatatcttc
ctttttcggtgtatctgcttagatgctcgagctcatatcgtttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTCATCTTTTAACATTGGCGT 186 107 379 Antisense
GTTTGACATTGTCTGCCCAATTCTT 567 449 468 Antisense
TTTTGGTCATTCTCTCGGTATTCCT 27 679 498 Antisense
TCATTTGCTTCTCACAACTTCTTGT 684 619 522 Antisense
ACGGCCAGCCGGATGGATATGCCAG 179 485 589 Antisense
TAAGCGCTGAGTTGCATCGTACCTA 706 635 713 Antisense
TATCCTTCCTATTGTAATGCCTGCA 94 659 783 Antisense
ATATATTCGCTTACGGTCTTTATCC 225 19 824 Antisense
GGTCTTTATCCATATATCTTCCTTT 489 503 838 Antisense
ATCTTCCTTTTTCGGTGTATCTGCT 478 31 853 Antisense
GATGCTCGAGCTCATATCGTTTCAT 59 415 880 Antisense
Sequence Source Affymetrix Proprietary Database