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[177900_s_at]

Description Y69H2.6 /REP_DB=WormBase Gene ID /WP=CE22824 /TR=Q9U1U4 /GB=CAB63403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 70      6grp_total > 31      4grp_total > 59      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 360.9
(0.8)
P 		358
(0.7)
P 		407.4
(3)
P 		280.3
(-3)
P 		127
B 340.2
(1.3)
P 		360.4
(2.5)
P 		368
(3)
P 		268.4
(-3)
P 		100
C 326.5
(0.2)
P 		391.7
(2.6)
P 		403.3
(3)
P 		238.6
(-3)
P 		165
avr 342.5
(0.7) 		370
(1.9) 		392.9
(3) 		262.4
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 424.3
(2.6)
P 		353.6
(1.2)
P 		443.6
(3)
P 		300.6
(0.1)
P 		197.5
(-1.9)
P 		142.8
(-3)
P 		301
B 312.7
(1.2)
P 		381.5
(3)
P 		311.9
(1.2)
P 		344.6
(2)
P 		248.8
(-0.5)
P 		152.1
(-3)
P 		229
C 291.1
(-0.1)
P 		362.4
(1.7)
P 		384.5
(2.3)
P 		411.6
(3)
P 		187.5
(-2.7)
P 		176.7
(-3)
P 		235
avr 342.7
(2) 		365.8
(2.6) 		380
(3) 		352.3
(2.3) 		211.3
(-1.5) 		157.2
(-3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 131.4
(3)
P 		77.7
(-0.6)
P 		106.5
(1.3)
P 		41
(-3)
P 		90
B 108.5
(3)
P 		89
(0.7)
P 		85.3
(0.3)
P 		57.2
(-3)
P 		51
C 108.1
(1.1)
P 		112.6
(1.3)
P 		140.6
(3)
P 		40.2
(-3)
P 		100
avr 116
(3) 		93.1
(1) 		110.8
(2.6) 		46.1
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 78.2
(-0.1)
P 		125.8
(3)
P 		96.6
(1.1)
P 		76.2
(-0.3)
P 		59.6
(-1.4)
P 		34.8
(-3)
P 		91
B 108.8
(1.4)
P 		127
(3)
P 		75.7
(-1.4)
P 		91.3
(-0)
P 		101.1
(0.8)
P 		56.7
(-3)
P 		70
C 107.9
(2.7)
P 		110.6
(3)
P 		97.9
(1.5)
P 		82.8
(-0.2)
P 		60.7
(-2.8)
P 		59.2
(-3)
P 		51
avr 98.3
(1.1) 		121.1
(3) 		90.1
(0.4) 		83.4
(-0.2) 		73.8
(-1) 		50.2
(-3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12816
Sequence Type Exemplar sequence
Representative Public ID Y69H2.6 NCBI
Target Description Y69H2.6 /REP_DB=WormBase Gene ID /WP=CE22824 /TR=Q9U1U4 /GB=CAB63403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075246 NCBI Caenorhabditis elegans UBiquitin Conjugating enzyme family member (ubc-19) (ubc-19) mRNA, complete cds. 11/11 None
GENEFINDER00000002610 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18688983:18692513:-1 10/11 None
Y69H2.6 ENSEMBL cdna:known chromosome:CEL140:V:18688955:18692331:-1 gene:Y69H2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002601 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18688954-18692331(-) 99.32 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ubc-19
Ensembl Y69H2.6
Entrez Gene 180223 Entrez gene
SwissProt Q9U1U4 EMBL-EBI
WormBase CE22824 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587097_AT similar to fused toes homolog cfa
CANINE:1584435_AT similar to fused toes homolog cfa
CANINE_2:CFA.11150.1.A1_AT similar to fused toes homolog cfa
CANINE_2:CFAAFFX.14948.1.S1_S_AT similar to fused toes homolog cfa
DROSOPHILA_2:1625700_A_AT crossbronx dm
DROSGENOME1:153430_AT crossbronx dm
CHICKEN:GGAAFFX.12542.1.S1_AT fused toes homolog (mouse) gga
CHICKEN:GGAAFFX.12542.1.S1_S_AT fused toes homolog (mouse) gga
CHICKEN:GGA.16714.1.S1_AT Fused toes homolog (mouse) gga
HG-U133_PLUS_2:218373_AT fused toes homolog (mouse) hs
HG-U133A:218373_AT fused toes homolog (mouse) hs
HG-FOCUS:218373_AT fused toes homolog (mouse) hs
HG-U133A_2:218373_AT fused toes homolog (mouse) hs
HU35KSUBC:RC_AA037396_AT fused toes homolog (mouse) hs
HG-U133B:223894_S_AT fused toes homolog (mouse) hs
HG-U133_PLUS_2:223894_S_AT fused toes homolog (mouse) hs
U133_X3P:G12654596_3P_A_AT fused toes homolog (mouse) hs
U133_X3P:G11968026_3P_AT fused toes homolog (mouse) hs
MOE430A:1430219_AT fused toes mm
MOUSE430A_2:1430219_AT fused toes mm
MOUSE430_2:1430219_AT fused toes mm
MG-U74AV2:101894_S_AT fused toes mm
MOE430A:1437767_S_AT fused toes mm
MOUSE430A_2:1437767_S_AT fused toes mm
MOUSE430_2:1437767_S_AT fused toes mm
MU11KSUBB:X71978_AT fused toes mm
MG-U74AV2:101892_F_AT fused toes mm
MG-U74AV2:101893_R_AT fused toes mm
MG-U74BV2:164217_AT fused toes mm
MOE430A:1423364_A_AT fused toes mm
MOUSE430A_2:1423364_A_AT fused toes mm
MOUSE430_2:1423364_A_AT fused toes mm
MU19KSUBA:TC20944_AT Fused toes, mRNA (cDNA clone MGC:6133 IMAGE:3498984) mm
MU19KSUBA:TC20944_G_AT Fused toes, mRNA (cDNA clone MGC:6133 IMAGE:3498984) mm
MU19KSUBB:TC31761_S_AT Fused toes, mRNA (cDNA clone MGC:6133 IMAGE:3498984) mm
RG-U34A:RC_AI180396_AT fused toes (predicted) rn
RG-U34A:RC_AI230602_AT fused toes (predicted) rn
RAE230A:1373837_AT fused toes (predicted) rn
RAT230_2:1373837_AT fused toes (predicted) rn
RAE230B:1385103_AT fused toes (predicted) rn
RAT230_2:1385103_AT fused toes (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63403 Hypothetical protein Y69H2.6 [Caenorhabditis elegans] ref|NP_507647.1| UBiquitin Conjugating enzyme family member (ubc-19) [Caenorhabditis elegans] 1.0E-153
blast CAB63403 Hypothetical protein Y69H2.6 [Caenorhabditis elegans] ref|NP_507647.1| UBiquitin Conjugating enzyme family member (ubc-19) [Caenorhabditis elegans] 1.0E-134
blast CAE73298 Hypothetical protein CBG20721 [Caenorhabditis briggsae] 1.0E-108
blast CAE73298 Hypothetical protein CBG20721 [Caenorhabditis briggsae] 6.0E-94
blast CAE56634 Hypothetical protein CBG24392 [Caenorhabditis briggsae] 9.0E-92
blast CAE56634 Hypothetical protein CBG24392 [Caenorhabditis briggsae] 3.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.4E-32
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 1.1E-25
Sequence
Target Sequence 
>C. ELEGANS:177900_S_AT
gagttatgcctgaaccggtcatttccagaaggatggaaaaaggaaaagcatagcctgaga
cgggtactggtggttttgcagagatccttctactcatacgacgtggacaccgacaagtgc
ataaatccagaagcttctgtgctctacaaagagcaccgtgacaaatttcgagaaatcgcc
aaagaatgtgtggaggcgagccgctcgatggtttatgatgagctcgccgagcaggagcac
gaccctaatggaatacgactcctgccctgggacgcccttacgcataaggcggctcgcgag
aaaatgctccaaatcggtgataactcgagatttcaaggcaccgctgcagattttcgtcgg
gaacatatttttagtaagatgggcttgcaagtgtctgaaattgtcgggaaaagctatccg
aacagctattcctggtttgacccggccgagatgactgtgatcaccaagtatgatgacgtg
gatttgagtcaggtaaacccatcggacagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTATGCCTGAACCGGTCATTTC 704 397 322 Antisense
GCCTGAGACGGGTACTGGTGGTTTT 100 283 374 Antisense
GGTGGTTTTGCAGAGATCCTTCTAC 8 499 390 Antisense
GATCCTTCTACTCATACGACGTGGA 155 417 404 Antisense
GCGAGCCGCTCGATGGTTTATGATG 68 291 517 Antisense
CGAGCAGGAGCACGACCCTAATGGA 403 251 549 Antisense
CTAATGGAATACGACTCCTGCCCTG 636 225 566 Antisense
TAACTCGAGATTTCAAGGCACCGCT 545 637 642 Antisense
GCACCGCTGCAGATTTTCGTCGGGA 479 315 659 Antisense
GAACAGCTATTCCTGGTTTGACCCG 417 351 741 Antisense
GTCAGGTAAACCCATCGGACAGCGC 246 467 809 Antisense
Sequence Source Affymetrix Proprietary Database