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[177899_at]

Description T03D8.7 /REP_DB=WormBase Gene ID /WP=CE18925 /TR=Q9XTY0 /GB=CAB07411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 43      6grp_total > 52      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 289.2
(3)
P 		265.2
(2.2)
P 		162.3
(-1.1)
P 		104.9
(-3)
P 		184
B 330.7
(3)
P 		243.2
(0.8)
P 		188
(-0.5)
P 		86.6
(-3)
P 		244
C 338.3
(3)
P 		208.5
(-1.1)
P 		186.4
(-1.8)
P 		146.5
(-3)
P 		192
avr 319.4
(3) 		239
(0.7) 		178.9
(-1.1) 		112.7
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1790
1 2 3 4 5 6 range
A 807.3
(-2.3)
P 		948.4
(-1.8)
P 		2198.3
(3)
P 		1489.3
(0.3)
P 		651.8
(-2.9)
P 		638.2
(-3)
P 		1560
B 803.8
(-2.6)
P 		1098.7
(-1.6)
P 		2427.8
(3)
P 		1042
(-1.8)
P 		822.5
(-2.6)
P 		693.7
(-3)
P 		1734
C 1091.7
(-0.3)
P 		995.9
(-1.2)
P 		1334
(2)
P 		1441.5
(3)
P 		810.1
(-3)
P 		858.7
(-2.5)
P 		631
avr 900.9
(-2.2) 		1014.3
(-1.6) 		1986.7
(3) 		1324.3
(-0.2) 		761.5
(-2.9) 		730.2
(-3) 		1257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 105.3
(3)
P 		57.6
(-0.2)
P 		42.4
(-1.2)
P 		15.4
(-3)
P 		90
B 105.5
(3)
P 		60.1
(-0.1)
P 		43.6
(-1.3)
P 		18.5
(-3)
P 		87
C 112
(3)
P 		60
(-0.6)
P 		65
(-0.2)
P 		24.7
(-3)
P 		87
avr 107.6
(3) 		59.2
(-0.3) 		50.3
(-0.9) 		19.5
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 148.8
(-3)
P 		337.3
(0.4)
P 		478.7
(3)
P 		377.7
(1.2)
P 		196.7
(-2.1)
P 		155.4
(-2.9)
P 		330
B 279.7
(-2.6)
P 		365.7
(-1.1)
P 		589.5
(3)
P 		276
(-2.7)
P 		334.2
(-1.6)
P 		258.7
(-3)
P 		331
C 404.6
(3)
P 		303.9
(-1.2)
P 		339.5
(0.3)
P 		289.9
(-1.8)
P 		262.1
(-3)
P 		287.5
(-1.9)
P 		143
avr 277.7
(-1.9) 		335.6
(-0.4) 		469.2
(3) 		314.5
(-0.9) 		264.3
(-2.2) 		233.9
(-3) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12775
Sequence Type Exemplar sequence
Representative Public ID T03D8.7 NCBI
Target Description T03D8.7 /REP_DB=WormBase Gene ID /WP=CE18925 /TR=Q9XTY0 /GB=CAB07411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075615 NCBI Caenorhabditis elegans T03D8.7 (T03D8.7) mRNA, complete cds. 11/11 None
SNAP00000040016 ENSEMBL cdna:SNAP chromosome:CEL140:V:20814206:20814524:1 11/11 None
T03D8.7 ENSEMBL cdna:known chromosome:CEL140:V:20814206:20814591:1 gene:T03D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20814205-20814524(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03D8.7
Entrez Gene 180363 Entrez gene
SwissProt Q9XTY0 EMBL-EBI
WormBase CE18925 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07411 Hypothetical protein T03D8.7 [Caenorhabditis elegans] ref|NP_508016.1| T03D8.7 [Caenorhabditis elegans] 3.0E-43
blast CAE61619 Hypothetical protein CBG05543 [Caenorhabditis briggsae] 3.0E-40
Sequence
Target Sequence 
>C. ELEGANS:177899_AT
ctctcattctgtcttctgattgcatttgcttactcccaatgttgttctggagcaccctta
ggaatgtgcatcaatcagcattgtccaaatggaactatgtgcaataacaattggtgttgc
cctggatgctatgatacatgttcgaactgttatatgtacactgcttactgtaataaccca
tattactcgtgtagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCATTCTGTCTTCTGATTGCAT 449 231 31 Antisense
TTCTGATTGCATTTGCTTACTCCCA 511 693 44 Antisense
ATTTGCTTACTCCCAATGTTGTTCT 652 17 54 Antisense
CAATGTTGTTCTGGAGCACCCTTAG 603 181 67 Antisense
GGAGCACCCTTAGGAATGTGCATCA 271 521 79 Antisense
ATGTGCATCAATCAGCATTGTCCAA 560 49 94 Antisense
AACAATTGGTGTTGCCCTGGATGCT 99 135 136 Antisense
GCCCTGGATGCTATGATACATGTTC 282 287 149 Antisense
GTTCGAACTGTTATATGTACACTGC 379 441 170 Antisense
GTACACTGCTTACTGTAATAACCCA 677 459 186 Antisense
AATAACCCATATTACTCGTGTAGTA 241 171 202 Antisense
Sequence Source Affymetrix Proprietary Database