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[177898_at]

Description E01G4.1 /REP_DB=WormBase Gene ID /WP=CE15754 /TR=O02236 /GB=CAB05718.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 88.9
(-0.8)
A 		77.8
(-1.7)
A 		62.6
(-3)
A 		133.3
(3)
A 		71
B 77.5
(-0.7)
A 		98.2
(3)
A 		78.6
(-0.5)
A 		64.6
(-3)
A 		34
C 123.8
(3)
A 		87.7
(-1.3)
A 		73.2
(-3)
A 		113.7
(1.8)
A 		51
avr 96.7
(1.7) 		87.9
(0) 		71.5
(-3) 		103.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 74.2
(2.7)
A 		77.3
(3)
A 		42
(-0.5)
A 		17
(-3)
A 		30.2
(-1.7)
A 		52.7
(0.6)
A 		60
B 83.8
(3)
A 		14.9
(-2.8)
A 		30.9
(-1.4)
A 		12.9
(-2.9)
A 		12.2
(-3)
A 		58.7
(0.9)
A 		72
C 83.8
(3)
A 		48.8
(-0.1)
A 		27.1
(-2)
A 		72.3
(2)
A 		15.2
(-3)
A 		74.8
(2.2)
A 		69
avr 80.6
(3) 		47
(-0.3) 		33.3
(-1.6) 		34.1
(-1.5) 		19.2
(-3) 		62.1
(1.2) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32.4
(3)
A 		16.9
(-2.8)
A 		16.4
(-3)
A 		19.5
(-1.8)
A 		16
B 24.7
(3)
A 		24.2
(2.7)
A 		18.2
(-0.6)
A 		13.8
(-3)
A 		11
C 41
(3)
A 		25.2
(-1.3)
A 		25.5
(-1.3)
A 		19.2
(-3)
A 		22
avr 32.7
(3) 		22.1
(-1.2) 		20
(-2) 		17.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.7
(-0.6)
A 		27.5
(3)
A 		9.1
(-1.8)
A 		4.3
(-3)
A 		9.1
(-1.8)
A 		12.8
(-0.8)
A 		23
B 29.1
(3)
A 		5
(-2.6)
A 		7.5
(-2)
A 		3.4
(-3)
A 		5
(-2.6)
A 		21.9
(1.3)
A 		26
C 31.1
(3)
A 		14.9
(-0.7)
A 		6.9
(-2.5)
A 		14.5
(-0.8)
A 		4.9
(-3)
A 		25
(1.6)
A 		26
avr 24.6
(3) 		15.8
(0.1) 		7.8
(-2.5) 		7.4
(-2.6) 		6.3
(-3) 		19.9
(1.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3179
Sequence Type Exemplar sequence
Representative Public ID E01G4.1 NCBI
Target Description E01G4.1 /REP_DB=WormBase Gene ID /WP=CE15754 /TR=O02236 /GB=CAB05718.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064430 NCBI Caenorhabditis elegans E01G4.1 (E01G4.1) mRNA, complete cds. 11/11 None
SNAP00000016565 ENSEMBL cdna:SNAP chromosome:CEL140:II:13441972:13447448:-1 11/11 None
GENEFINDER00000016575 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13443081:13447448:-1 11/11 None
E01G4.1 ENSEMBL cdna:known chromosome:CEL140:II:13442774:13447491:-1 gene:E01G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13443077-13447457(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01G4.1
Entrez Gene 174986 Entrez gene
SwissProt O02236 EMBL-EBI
WormBase CE15754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05718 Hypothetical protein E01G4.1 [Caenorhabditis elegans] ref|NP_496831.1| E01G4.1 [Caenorhabditis elegans] 0.0
blast CAE73347 Hypothetical protein CBG20779 [Caenorhabditis briggsae] 0.0
blast CAG31680 hypothetical protein [Gallus gallus] ref|NP_001012827.1| TBC1 domain family, member 15 [Gallus gallus] 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:177898_AT
ggcttcagtaagatcacctcattcgtacaggatcaggtgatcccatcagtgctcaatgat
acggacgcggtgactcaagaggagaagatccgtctgatgagagagctccggctggctgaa
gagcaaatgcgtgtgcattcggatgcggctggagaatttgaagttgtcacacagttggaa
ctcccgccgagacccgagatttatagagagttgcccgtttccaaggacttgtggaattcg
tttaagctctcgaatggctcgtacgatccgatgaagcttcaccatctgaaaatgaacgtg
ttccgtggtggactaaatgcagaactccgtaaagaagcctggaaatgtctactcggctac
cgtcaatggcacgaatcggacacagatttccagaccagacgtgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCAGTAAGATCACCTCATTCG 75 537 664 Antisense
GGATCAGGTGATCCCATCAGTGCTC 630 511 693 Antisense
AGTGCTCAATGATACGGACGCGGTG 688 57 711 Antisense
GTCTGATGAGAGAGCTCCGGCTGGC 49 471 755 Antisense
ATGCGTGTGCATTCGGATGCGGCTG 612 41 790 Antisense
CCCGCCGAGACCCGAGATTTATAGA 406 259 846 Antisense
TATAGAGAGTTGCCCGTTTCCAAGG 410 659 865 Antisense
AGCTCTCGAATGGCTCGTACGATCC 71 81 908 Antisense
GATCCGATGAAGCTTCACCATCTGA 385 417 928 Antisense
AAATGTCTACTCGGCTACCGTCAAT 262 121 1006 Antisense
ACAGATTTCCAGACCAGACGTGCAG 131 109 1045 Antisense
Sequence Source Affymetrix Proprietary Database